Chapter 1 Expression Analysis and Genome Annotations with RNA Sequencing

Chapter 2 The Application of Next Generation Sequencing Techniques to Plant Epigenomics

Chapter 4 Variant Calling Using NGS Data in European Aspen (Populus tremula)

Chapter 5 Leafy Spurge Genomics: A Model Perennial Weed to Investigate Development, Stress Responses, and Invasiveness

Chapter 6 Utilization of NGS and Proteomic-Based Approaches to Gain Insights on Cellular Responses to Singlet Oxygen and Improve Energy Yields for Bacterial Stress Adaptation

Chapter 7 Experimental Evolution and Next Generation Sequencing Illuminate the Evolutionary Trajectories of Microbes

Chapter 8 Plant Carbohydrate Active Enzyme (CAZyme) Repertoires: A Comparative Study

Chapter 9 Metagenomics of Plant–Microbe Interactions

Chapter 10 Genes and Trans-Factors Underlying Embryogenic Transition in Plant Soma-Cells

Chapter 11 Bioinformatics Tools to Analyze Proteome and Genome Data

Chapter 12 High-Throughput Transcriptome Analysis of Plant Stress Responses

Chapter 13 CNV and Structural Variation in Plants: Prospects of NGS Approaches