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Bioinformatics and Phylogenetics

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Cover of 'Bioinformatics and Phylogenetics'

Table of Contents

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    Book Overview
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    Chapter 1 A Review of Approaches for Optimizing Phylogenetic Likelihood Calculations
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    Chapter 2 Numerical Optimization Techniques in Maximum Likelihood Tree Inference
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    Chapter 3 High-Performance Phylogenetic Inference
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    Chapter 4 Hands-on Introduction to Sequence-Length Requirements in Phylogenetics
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    Chapter 5 Gene Family Evolution—An Algorithmic Framework
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    Chapter 6 Divide-and-Conquer Tree Estimation: Opportunities and Challenges
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    Chapter 7 Taxonomic Supertree Construction with Incertae sedis Taxa
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    Chapter 8 Evolutionary Rate Change and the Transformation from Additive to Ultrametric: Modal Similarity of Orthologs in Fish and Flower Phylogenomics
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    Chapter 9 Ancestral Genome Reconstruction
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    Chapter 10 Genome Rearrangement Problems with Single and Multiple Gene Copies: A Review
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    Chapter 11 Computational Models for Cancer Phylogenetics
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    Chapter 12 Clusters, Trees, and Phylogenetic Network Classes
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    Chapter 13 Advances in Computational Methods for Phylogenetic Networks in the Presence of Hybridization
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    Chapter 14 A Perspective on Comparative and Functional Genomics
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    Chapter 15 Integer Linear Programming in Computational Biology: Overview of ILP, and New Results for Traveling Salesman Problems in Biology
Attention for Chapter 11: Computational Models for Cancer Phylogenetics
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