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A Guide to Biomolecular Simulations

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Cover of 'A Guide to Biomolecular Simulations'

Table of Contents

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    Book Overview
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    Chapter 1 Introduction: Note to the Student
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    Chapter 2 Introduction: Note to the Instructor
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    Chapter 3 Introduction: UNIX
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    Chapter 4 Introduction: CHARMM Primer
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    Chapter 5 Introduction: CHARMM Template Files
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    Chapter 6 Molecular Visualization
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    Chapter 7 Energy and Minimization
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    Chapter 8 Minimization and Analysis
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    Chapter 9 Conformational Analysis
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    Chapter 10 Basic Molecular Dynamics in Vacuum and in Solution
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    Chapter 11 Molecular Dynamics and Analysis
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    Chapter 12 Ligand Dynamics in Myoglobin
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    Chapter 13 Normal Mode Analysis
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    Chapter 14 Free Energy Calculations
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    Chapter 15 Minimum Energy Paths and Transition States
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    Chapter 16 Multiple Copy Simultaneous Search
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    Chapter 17 Hemoglobin Cooperativity: the T-R Transition
Attention for Chapter 7: Energy and Minimization
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