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Gene Expression Analysis

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Cover of 'Gene Expression Analysis'

Table of Contents

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    Book Overview
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    Chapter 1 Overview of Gene Expression Analysis: Transcriptomics
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    Chapter 2 RNA-Seq and Expression Arrays: Selection Guidelines for Genome-Wide Expression Profiling
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    Chapter 3 A Guide for Designing and Analyzing RNA-Seq Data
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    Chapter 4 SureSelect XT RNA Direct: A Technique for Expression Analysis Through Sequencing of Target-Enriched FFPE Total RNA
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    Chapter 5 Simultaneous, Multiplexed Detection of RNA and Protein on the NanoString ® nCounter ® Platform
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    Chapter 6 Transcript Profiling Using Long-Read Sequencing Technologies
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    Chapter 7 Making and Sequencing Heavily Multiplexed, High-Throughput 16S Ribosomal RNA Gene Amplicon Libraries Using a Flexible, Two-Stage PCR Protocol
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    Chapter 8 MicroRNA Expression Analysis: Next-Generation Sequencing
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    Chapter 9 Identification of Transcriptional Regulators That Bind to Long Noncoding RNAs by RNA Pull-Down and RNA Immunoprecipitation
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    Chapter 10 Single-Cell mRNA-Seq Using the Fluidigm C1 System and Integrated Fluidics Circuits
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    Chapter 11 Current and Future Methods for mRNA Analysis: A Drive Toward Single Molecule Sequencing
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    Chapter 12 Expression Profiling of Differentially Regulated Genes in Fanconi Anemia
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    Chapter 13 A Review of Transcriptome Analysis in Pulmonary Vascular Diseases
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    Chapter 14 Differential Gene Expression Analysis of Plants
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    Chapter 15 High Throughput Sequencing-Based Approaches for Gene Expression Analysis
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    Chapter 16 Network Analysis of Gene Expression
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    Chapter 17 Analysis of ChIP-Seq and RNA-Seq Data with BioWardrobe
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    Chapter 18 Bayesian Network to Infer Drug-Induced Apoptosis Circuits from Connectivity Map Data
  20. Altmetric Badge
    Chapter 19 Erratum to: RNA-Seq and Expression Arrays: Selection Guidelines for Genome-Wide Expression Profiling
Attention for Chapter 10: Single-Cell mRNA-Seq Using the Fluidigm C1 System and Integrated Fluidics Circuits
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Chapter title
Single-Cell mRNA-Seq Using the Fluidigm C1 System and Integrated Fluidics Circuits
Chapter number 10
Book title
Gene Expression Analysis
Published in
Methods in molecular biology, January 2018
DOI 10.1007/978-1-4939-7834-2_10
Pubmed ID
Book ISBNs
978-1-4939-7833-5, 978-1-4939-7834-2
Authors

Haibiao Gong, Devin Do, Ramesh Ramakrishnan, Gong, Haibiao, Do, Devin, Ramakrishnan, Ramesh

Abstract

Single-cell mRNA-seq is a valuable tool to dissect expression profiles and to understand the regulatory network of genes. Microfluidics is well suited for single-cell analysis owing both to the small volume of the reaction chambers and easiness of automation. Here we describe the workflow of single-cell mRNA-seq using C1 IFC, which can isolate and process up to 96 cells. Both on-chip procedure (lysis, reverse transcription, and preamplification PCR) and off-chip sequencing library preparation protocols are described. The workflow generates full-length mRNA information, which is more valuable compared to 3' end counting method for many applications.

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The data shown below were collected from the profiles of 2 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 35 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 35 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 6 17%
Student > Doctoral Student 3 9%
Student > Master 3 9%
Researcher 3 9%
Student > Bachelor 2 6%
Other 4 11%
Unknown 14 40%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 11 31%
Agricultural and Biological Sciences 4 11%
Environmental Science 1 3%
Computer Science 1 3%
Immunology and Microbiology 1 3%
Other 3 9%
Unknown 14 40%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 17 May 2018.
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#18,612,796
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Outputs from Methods in molecular biology
#7,980
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#330,687
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Outputs of similar age from Methods in molecular biology
#950
of 1,499 outputs
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