Chapter title |
Single-Cell mRNA-Seq Using the Fluidigm C1 System and Integrated Fluidics Circuits
|
---|---|
Chapter number | 10 |
Book title |
Gene Expression Analysis
|
Published in |
Methods in molecular biology, January 2018
|
DOI | 10.1007/978-1-4939-7834-2_10 |
Pubmed ID | |
Book ISBNs |
978-1-4939-7833-5, 978-1-4939-7834-2
|
Authors |
Haibiao Gong, Devin Do, Ramesh Ramakrishnan, Gong, Haibiao, Do, Devin, Ramakrishnan, Ramesh |
Abstract |
Single-cell mRNA-seq is a valuable tool to dissect expression profiles and to understand the regulatory network of genes. Microfluidics is well suited for single-cell analysis owing both to the small volume of the reaction chambers and easiness of automation. Here we describe the workflow of single-cell mRNA-seq using C1 IFC, which can isolate and process up to 96 cells. Both on-chip procedure (lysis, reverse transcription, and preamplification PCR) and off-chip sequencing library preparation protocols are described. The workflow generates full-length mRNA information, which is more valuable compared to 3' end counting method for many applications. |
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