↓ Skip to main content

DNA-Protein Interactions

Overview of attention for book
Cover of 'DNA-Protein Interactions'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Electrophoretic Mobility Shift Assay Using Radiolabeled DNA Probes
  3. Altmetric Badge
    Chapter 2 In Vitro DNase I Footprinting
  4. Altmetric Badge
    Chapter 3 DNA-Protein Interactions
  5. Altmetric Badge
    Chapter 4 In Cellulo DNA Analysis: LMPCR Footprinting.
  6. Altmetric Badge
    Chapter 5 Southwestern Blotting Assay
  7. Altmetric Badge
    Chapter 6 Single-Molecule Approaches for the Characterization of Riboswitch Folding Mechanisms
  8. Altmetric Badge
    Chapter 7 Probing of Nascent Riboswitch Transcripts
  9. Altmetric Badge
    Chapter 8 DNA-Protein Interactions
  10. Altmetric Badge
    Chapter 9 Precise Identification of Genome-Wide Transcription Start Sites in Bacteria by 5'-Rapid Amplification of cDNA Ends (5'-RACE).
  11. Altmetric Badge
    Chapter 10 Analysis of DNA Supercoiling Induced by DNA-Protein Interactions.
  12. Altmetric Badge
    Chapter 11 Precise Identification of DNA-Binding Proteins Genomic Location by Exonuclease Coupled Chromatin Immunoprecipitation (ChIP-exo).
  13. Altmetric Badge
    Chapter 12 The Cruciform DNA Mobility Shift Assay: A Tool to Study Proteins That Recognize Bent DNA.
  14. Altmetric Badge
    Chapter 13 Individual and Sequential Chromatin Immunoprecipitation Protocols.
  15. Altmetric Badge
    Chapter 14 Chromatin Endogenous Cleavage (ChEC) as a Method to Quantify Protein Interaction with Genomic DNA in Saccharomyces cerevisiae.
  16. Altmetric Badge
    Chapter 15 Selection and Validation of Spacer Sequences for CRISPR-Cas9 Genome Editing and Transcription Regulation in Bacteria.
  17. Altmetric Badge
    Chapter 16 Detection of Short-Range DNA Interactions in Mammalian Cells Using High-Resolution Circular Chromosome Conformation Capture Coupled to Deep Sequencing.
  18. Altmetric Badge
    Chapter 17 Global Mapping of Open Chromatin Regulatory Elements by Formaldehyde-Assisted Isolation of Regulatory Elements Followed by Sequencing (FAIRE-seq).
  19. Altmetric Badge
    Chapter 18 Aggregate and Heatmap Representations of Genome-Wide Localization Data Using VAP, a Versatile Aggregate Profiler.
  20. Altmetric Badge
    Chapter 19 Circular Dichroism for the Analysis of Protein–DNA Interactions
  21. Altmetric Badge
    Chapter 20 Quantitative Investigation of Protein–Nucleic Acid Interactions by Biosensor Surface Plasmon Resonance
  22. Altmetric Badge
    Chapter 21 Identification of Nucleic Acid High Affinity Binding Sequences of Proteins by SELEX
Attention for Chapter 9: Precise Identification of Genome-Wide Transcription Start Sites in Bacteria by 5'-Rapid Amplification of cDNA Ends (5'-RACE).
Altmetric Badge

About this Attention Score

  • Average Attention Score compared to outputs of the same age and source

Mentioned by

twitter
1 X user

Readers on

mendeley
19 Mendeley
You are seeing a free-to-access but limited selection of the activity Altmetric has collected about this research output. Click here to find out more.
Chapter title
Precise Identification of Genome-Wide Transcription Start Sites in Bacteria by 5'-Rapid Amplification of cDNA Ends (5'-RACE).
Chapter number 9
Book title
DNA-Protein Interactions
Published in
Methods in molecular biology, January 2015
DOI 10.1007/978-1-4939-2877-4_9
Pubmed ID
Book ISBNs
978-1-4939-2876-7, 978-1-4939-2877-4
Authors

Matteau, Dominick, Rodrigue, Sébastien, Dominick Matteau, Sébastien Rodrigue

Abstract

Transcription start sites are commonly used to locate promoter elements in bacterial genomes. TSS were previously studied one gene at a time, often through 5'-rapid amplification of cDNA ends (5'-RACE). This technique has now been adapted for high-throughput sequencing and can be used to precisely identify TSS in a genome-wide fashion for practically any bacterium, which greatly contributes to our understanding of gene regulatory networks in microorganisms.

X Demographics

X Demographics

The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 19 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Luxembourg 1 5%
Unknown 18 95%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 7 37%
Researcher 3 16%
Student > Bachelor 2 11%
Student > Doctoral Student 2 11%
Student > Master 2 11%
Other 1 5%
Unknown 2 11%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 6 32%
Agricultural and Biological Sciences 6 32%
Immunology and Microbiology 4 21%
Medicine and Dentistry 1 5%
Unknown 2 11%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 26 September 2015.
All research outputs
#18,427,608
of 22,829,083 outputs
Outputs from Methods in molecular biology
#7,917
of 13,125 outputs
Outputs of similar age
#255,875
of 353,131 outputs
Outputs of similar age from Methods in molecular biology
#481
of 997 outputs
Altmetric has tracked 22,829,083 research outputs across all sources so far. This one is in the 11th percentile – i.e., 11% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,125 research outputs from this source. They receive a mean Attention Score of 3.4. This one is in the 24th percentile – i.e., 24% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 353,131 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 16th percentile – i.e., 16% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 997 others from the same source and published within six weeks on either side of this one. This one is in the 36th percentile – i.e., 36% of its contemporaries scored the same or lower than it.