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Fungal Genomics

Overview of attention for book
Cover of 'Fungal Genomics'

Table of Contents

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    Book Overview
  2. Altmetric Badge
    Chapter 1 Introduction: Overview of Fungal Genomics
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    Chapter 2 Fungal Genomic DNA Extraction Methods for Rapid Genotyping and Genome Sequencing
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    Chapter 3 Purification of Fungal High Molecular Weight Genomic DNA from Environmental Samples
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    Chapter 4 Genome Sequencing
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    Chapter 5 Methods for Genomic Characterization and Maintenance of Anaerobic Fungi
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    Chapter 6 Efficient Extraction Method for High Quality Fungal RNA from Complex Lignocellulosic Substrates
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    Chapter 7 Isolation of High Quality RNA for Metatranscriptomic Analysis of Lignocellulose Digestion in the Rumen
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    Chapter 8 Fungal Transcriptomics
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    Chapter 9 Mass Spectrometry-Based Proteomics
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    Chapter 10 Mass Spectrometry-Based Metabolomics
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    Chapter 11 Genome Editing: CRISPR-Cas9
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    Chapter 12 Evolutionary Adaptation to Generate Mutants
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    Chapter 13 Genome Assembly
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    Chapter 14 Fungal Epigenomics: Detection and Analysis
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    Chapter 15 Fungal Genome Annotation
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    Chapter 16 Manual Gene Curation and Functional Annotation
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    Chapter 17 Evaluating Programs for Predicting Genes and Transcripts with RNA-Seq Support in Fungal Genomes
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    Chapter 18 Genomic Sequence Variation Analysis by Resequencing
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    Chapter 19 ChIP-Seq Analysis in Neurospora crassa
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    Chapter 20 Fungal Phylogenomics
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    Chapter 21 Phylogenetic Analysis of Protein Family
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    Chapter 22 Parasexual Crossings for Bulk Segregant Analysis in Aspergillus niger to Facilitate Mutant Identification Via Whole Genome Sequencing
Attention for Chapter 11: Genome Editing: CRISPR-Cas9
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Chapter title
Genome Editing: CRISPR-Cas9
Chapter number 11
Book title
Fungal Genomics
Published in
Methods in molecular biology, January 2018
DOI 10.1007/978-1-4939-7804-5_11
Pubmed ID
Book ISBNs
978-1-4939-7803-8, 978-1-4939-7804-5
Authors

Jakob B. Hoof, Christina S. Nødvig, Uffe H. Mortensen, Hoof, Jakob B., Nødvig, Christina S., Mortensen, Uffe H.

Abstract

In the present chapter, we present the protocols and guidelines to facilitate implementation of CRISPR-Cas9 technology in fungi where few or no genetic tools are in place. Hence, we firstly explain how to identify dominant markers for genetic transformation. Secondly, we provide a guide for construction of Cas9/sgRNA episomal expression vectors. Thirdly, we present how to mutagenize reporter genes to explore the efficiency of CRISPR-Cas9 in the relevant fungus and to ease subsequent CRISPR-mediated genetic engineering. Lastly, we describe how to make CRISPR-mediated marker-dependent and marker-free gene targeting.

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X Demographics

The data shown below were collected from the profiles of 3 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 50 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 50 100%

Demographic breakdown

Readers by professional status Count As %
Student > Bachelor 12 24%
Student > Ph. D. Student 11 22%
Student > Master 3 6%
Student > Postgraduate 2 4%
Researcher 2 4%
Other 1 2%
Unknown 19 38%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 13 26%
Agricultural and Biological Sciences 9 18%
Engineering 2 4%
Pharmacology, Toxicology and Pharmaceutical Science 1 2%
Arts and Humanities 1 2%
Other 5 10%
Unknown 19 38%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 13 June 2018.
All research outputs
#17,980,413
of 23,090,520 outputs
Outputs from Methods in molecular biology
#7,313
of 13,206 outputs
Outputs of similar age
#310,675
of 442,629 outputs
Outputs of similar age from Methods in molecular biology
#869
of 1,499 outputs
Altmetric has tracked 23,090,520 research outputs across all sources so far. This one is in the 19th percentile – i.e., 19% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,206 research outputs from this source. They receive a mean Attention Score of 3.4. This one is in the 39th percentile – i.e., 39% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 442,629 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 25th percentile – i.e., 25% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 1,499 others from the same source and published within six weeks on either side of this one. This one is in the 36th percentile – i.e., 36% of its contemporaries scored the same or lower than it.