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Fungal Genomics

Overview of attention for book
Cover of 'Fungal Genomics'

Table of Contents

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    Book Overview
  2. Altmetric Badge
    Chapter 1 Introduction: Overview of Fungal Genomics
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    Chapter 2 Fungal Genomic DNA Extraction Methods for Rapid Genotyping and Genome Sequencing
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    Chapter 3 Purification of Fungal High Molecular Weight Genomic DNA from Environmental Samples
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    Chapter 4 Genome Sequencing
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    Chapter 5 Methods for Genomic Characterization and Maintenance of Anaerobic Fungi
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    Chapter 6 Efficient Extraction Method for High Quality Fungal RNA from Complex Lignocellulosic Substrates
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    Chapter 7 Isolation of High Quality RNA for Metatranscriptomic Analysis of Lignocellulose Digestion in the Rumen
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    Chapter 8 Fungal Transcriptomics
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    Chapter 9 Mass Spectrometry-Based Proteomics
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    Chapter 10 Mass Spectrometry-Based Metabolomics
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    Chapter 11 Genome Editing: CRISPR-Cas9
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    Chapter 12 Evolutionary Adaptation to Generate Mutants
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    Chapter 13 Genome Assembly
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    Chapter 14 Fungal Epigenomics: Detection and Analysis
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    Chapter 15 Fungal Genome Annotation
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    Chapter 16 Manual Gene Curation and Functional Annotation
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    Chapter 17 Evaluating Programs for Predicting Genes and Transcripts with RNA-Seq Support in Fungal Genomes
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    Chapter 18 Genomic Sequence Variation Analysis by Resequencing
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    Chapter 19 ChIP-Seq Analysis in Neurospora crassa
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    Chapter 20 Fungal Phylogenomics
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    Chapter 21 Phylogenetic Analysis of Protein Family
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    Chapter 22 Parasexual Crossings for Bulk Segregant Analysis in Aspergillus niger to Facilitate Mutant Identification Via Whole Genome Sequencing
Attention for Chapter 5: Methods for Genomic Characterization and Maintenance of Anaerobic Fungi
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Chapter title
Methods for Genomic Characterization and Maintenance of Anaerobic Fungi
Chapter number 5
Book title
Fungal Genomics
Published in
Methods in molecular biology, January 2018
DOI 10.1007/978-1-4939-7804-5_5
Pubmed ID
Book ISBNs
978-1-4939-7803-8, 978-1-4939-7804-5
Authors

Xuefeng Peng, Candice L. Swift, Michael K. Theodorou, Michelle A. O’Malley, Peng, Xuefeng, Swift, Candice L., Theodorou, Michael K., O’Malley, Michelle A.

Abstract

The rapid development of molecular biology and bioinformatics has fueled renewed interests in anaerobic fungi from the phylum Neocallimastigomycota. This chapter presents well-established methods for isolation, routine cultivation, and cryopreservation of anaerobic fungi. Moreover, detailed nucleic acid extraction protocols are provided, which should enable readers to isolate high-quality DNA and RNA from a variety of anaerobic fungal culture media for downstream applications such as next-generation sequencing.

X Demographics

X Demographics

The data shown below were collected from the profiles of 2 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 18 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 18 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 7 39%
Student > Bachelor 3 17%
Researcher 3 17%
Unspecified 1 6%
Student > Master 1 6%
Other 0 0%
Unknown 3 17%
Readers by discipline Count As %
Chemical Engineering 5 28%
Biochemistry, Genetics and Molecular Biology 4 22%
Agricultural and Biological Sciences 2 11%
Environmental Science 1 6%
Philosophy 1 6%
Other 2 11%
Unknown 3 17%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 25 July 2018.
All research outputs
#18,294,766
of 23,498,099 outputs
Outputs from Methods in molecular biology
#7,482
of 13,368 outputs
Outputs of similar age
#313,455
of 444,852 outputs
Outputs of similar age from Methods in molecular biology
#862
of 1,485 outputs
Altmetric has tracked 23,498,099 research outputs across all sources so far. This one is in the 19th percentile – i.e., 19% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,368 research outputs from this source. They receive a mean Attention Score of 3.4. This one is in the 38th percentile – i.e., 38% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 444,852 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 25th percentile – i.e., 25% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 1,485 others from the same source and published within six weeks on either side of this one. This one is in the 36th percentile – i.e., 36% of its contemporaries scored the same or lower than it.