Chapter 1 Introduction to Biophysics of DNA–Protein Interactions: From Single Molecules to Biological Systems

Chapter 2 Single-Molecule Imaging of LacI Diffusing Along Nonspecific DNA

Chapter 4 Role of DNA Conformations in Gene Regulation

Chapter 5 Recognition of Nucleic Acids by Transcription Factor NF-κB

Chapter 6 Dynamics and Mechanism of DNA-Bending Proteins in Binding Site Recognition

Chapter 7 Studies of Sequence-Nonspecific HMGB DNA-Binding Proteins

Chapter 8 DNA Interactions with Single-Stranded DNA Binding Proteins and Retroviral Nucleic Acid Chaperones by Force Spectroscopy

Chapter 9 DNA Looping in Prophage Lambda: New Insight from Single-Molecule Microscopy

Chapter 10 Dynamics of Protein–ssDNA Interactions in the Bacteriophage T4 Homologous Recombination System

Chapter 11 Polymerase Switching in Response to DNA Damage

Chapter 12 Topological Probes of a Cooperative, Nonspecific Protein–DNA Complex

Chapter 13 How to Think Like a Single Molecule: Obtaining Quantitative Measurements on Single DNA Molecules and Chromatin Fibers

Chapter 14 Long-Range Chromatin Interactions in Cells