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Bioinformatics

Overview of attention for book
Cover of 'Bioinformatics'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 UNAFold: software for nucleic acid folding and hybridization.
  3. Altmetric Badge
    Chapter 2 Protein Structure Prediction
  4. Altmetric Badge
    Chapter 3 An Introduction to Protein Contact Prediction
  5. Altmetric Badge
    Chapter 4 Analysis of Mass Spectrometry Data in Proteomics
  6. Altmetric Badge
    Chapter 5 The Classification of Protein Domains
  7. Altmetric Badge
    Chapter 6 Inferring Function from Homology
  8. Altmetric Badge
    Chapter 7 The Rosetta Stone Method
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    Chapter 8 Inferring Functional Relationships from Conservation of Gene Order
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    Chapter 9 Phylogenetic Profiling
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    Chapter 10 Phylogenetic Shadowing
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    Chapter 11 Prediction of Regulatory Elements
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    Chapter 12 Expression and Microarrays
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    Chapter 13 Identifying Components of Complexes
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    Chapter 14 Integrating Functional Genomics Data
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    Chapter 15 Computational diagnostics with gene expression profiles
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    Chapter 16 Analysis of Quantitative Trait Loci
  18. Altmetric Badge
    Chapter 17 Molecular Similarity Concepts and Search Calculations
  19. Altmetric Badge
    Chapter 18 Optimization of the MAD Algorithm for Virtual Screening
  20. Altmetric Badge
    Chapter 19 Combinatorial Optimization Models for Finding Genetic Signatures from Gene Expression Datasets
  21. Altmetric Badge
    Chapter 20 Genetic Signatures for a Rodent Model of Parkinson's Disease Using Combinatorial Optimization Methods
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    Chapter 21 Developing Fixed-Parameter Algorithms to Solve Combinatorially Explosive Biological Problems
  23. Altmetric Badge
    Chapter 22 Clustering
  24. Altmetric Badge
    Chapter 23 Visualization
  25. Altmetric Badge
    Chapter 24 Constructing Computational Pipelines
  26. Altmetric Badge
    Chapter 25 Text Mining
Attention for Chapter 19: Combinatorial Optimization Models for Finding Genetic Signatures from Gene Expression Datasets
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  • In the top 5% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (98th percentile)
  • High Attention Score compared to outputs of the same age and source (95th percentile)

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3 news outlets
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Citations

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Chapter title
Combinatorial Optimization Models for Finding Genetic Signatures from Gene Expression Datasets
Chapter number 19
Book title
Bioinformatics
Published in
Methods in molecular biology, January 2008
DOI 10.1007/978-1-60327-429-6_19
Pubmed ID
Book ISBNs
978-1-60327-428-9, 978-1-60327-429-6
Authors

Regina Berretta, Wagner Costa, Pablo Moscato, Berretta, Regina, Costa, Wagner, Moscato, Pablo

Abstract

The aim of this chapter is to present combinatorial optimization models and techniques for the analysis of microarray datasets. The chapter illustrates the application of a novel objective function that guides the search for high-quality solutions for sequential ordering of expression profiles. The approach is unsupervised and a metaheuristic method (a memetic algorithm) is used to provide high-quality solutions. For the problem of selecting discriminative groups of genes, we used a supervised method that has provided good results in a variety of datasets. This chapter illustrates the application of these models in an Alzheimer's disease microarray dataset.

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X Demographics

The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 23 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 1 4%
Australia 1 4%
Unknown 21 91%

Demographic breakdown

Readers by professional status Count As %
Researcher 7 30%
Student > Ph. D. Student 6 26%
Student > Master 3 13%
Professor > Associate Professor 2 9%
Professor 1 4%
Other 3 13%
Unknown 1 4%
Readers by discipline Count As %
Agricultural and Biological Sciences 11 48%
Computer Science 4 17%
Psychology 2 9%
Medicine and Dentistry 2 9%
Mathematics 1 4%
Other 2 9%
Unknown 1 4%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 34. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 03 February 2015.
All research outputs
#983,304
of 22,715,151 outputs
Outputs from Methods in molecular biology
#91
of 13,079 outputs
Outputs of similar age
#2,963
of 155,927 outputs
Outputs of similar age from Methods in molecular biology
#4
of 87 outputs
Altmetric has tracked 22,715,151 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 95th percentile: it's in the top 5% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 13,079 research outputs from this source. They receive a mean Attention Score of 3.3. This one has done particularly well, scoring higher than 99% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 155,927 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 98% of its contemporaries.
We're also able to compare this research output to 87 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 95% of its contemporaries.