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Next Generation Microarray Bioinformatics

Overview of attention for book
Cover of 'Next Generation Microarray Bioinformatics'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 A Primer on the Current State of Microarray Technologies
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    Chapter 2 The KEGG Databases and Tools Facilitating Omics Analysis: Latest Developments Involving Human Diseases and Pharmaceuticals.
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    Chapter 3 Next Generation Microarray Bioinformatics
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    Chapter 4 Analyzing Cancer Samples with SNP Arrays
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    Chapter 5 Classification Approaches for Microarray Gene Expression Data Analysis
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    Chapter 6 Biclustering of time series microarray data.
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    Chapter 7 Using the Bioconductor GeneAnswers Package to Interpret Gene Lists
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    Chapter 8 Analysis of Isoform Expression from Splicing Array Using Multiple Comparisons
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    Chapter 9 Functional Comparison of Microarray Data Across Multiple Platforms Using the Method of Percentage of Overlapping Functions
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    Chapter 10 Performance Comparison of Multiple Microarray Platforms for Gene Expression Profiling
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    Chapter 11 Integrative Approaches for Microarray Data Analysis
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    Chapter 12 Modeling Gene Regulation Networks Using Ordinary Differential Equations
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    Chapter 13 Nonhomogeneous Dynamic Bayesian Networks in Systems Biology
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    Chapter 14 Inference of Regulatory Networks from Microarray Data with R and the Bioconductor Package qpgraph
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    Chapter 15 Effective Non-linear Methods for Inferring Genetic Regulation from Time-Series Microarray Gene Expression Data
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    Chapter 16 An overview of the analysis of next generation sequencing data.
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    Chapter 17 How to Analyze Gene Expression Using RNA-Sequencing Data
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    Chapter 18 Analyzing ChIP-seq Data: Preprocessing, Normalization, Differential Identification, and Binding Pattern Characterization.
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    Chapter 19 Identifying Differential Histone Modification Sites from ChIP‐seq Data
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    Chapter 20 ChIP-Seq Data Analysis: Identification of Protein–DNA Binding Sites with SISSRs Peak-Finder
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    Chapter 21 Using ChIPMotifs for De Novo Motif Discovery of OCT4 and ZNF263 Based on ChIP-Based High-Throughput Experiments.
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    Chapter 22 Hidden Markov Models for Controlling False Discovery Rate in Genome-Wide Association Analysis
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    Chapter 23 Employing Gene Set Top Scoring Pairs to Identify Deregulated Pathway-Signatures in Dilated Cardiomyopathy from Integrated Microarray Gene Expression Data
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    Chapter 24 JAMIE: A Software Tool for Jointly Analyzing Multiple ChIP-chip Experiments
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    Chapter 25 Epigenetic Analysis: ChIP-chip and ChIP-seq
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    Chapter 26 BiNGS!SL-seq: A Bioinformatics Pipeline for the Analysis and Interpretation of Deep Sequencing Genome-Wide Synthetic Lethal Screen.
Attention for Chapter 16: An overview of the analysis of next generation sequencing data.
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (90th percentile)
  • High Attention Score compared to outputs of the same age and source (92nd percentile)

Mentioned by

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1 blog
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6 X users
facebook
2 Facebook pages

Citations

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12 Dimensions

Readers on

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252 Mendeley
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8 CiteULike
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Chapter title
An overview of the analysis of next generation sequencing data.
Chapter number 16
Book title
Next Generation Microarray Bioinformatics
Published in
Methods in molecular biology, January 2012
DOI 10.1007/978-1-61779-400-1_16
Pubmed ID
Book ISBNs
978-1-61779-399-8, 978-1-61779-400-1
Authors

Andreas Gogol-Döring, Wei Chen, Gogol-Döring, Andreas, Chen, Wei

Abstract

Next generation sequencing is a common and versatile tool for biological and medical research. We describe the basic steps for analyzing next generation sequencing data, including quality checking and mapping to a reference genome. We also explain the further data analysis for three common applications of next generation sequencing: variant detection, RNA-seq, and ChIP-seq.

X Demographics

X Demographics

The data shown below were collected from the profiles of 6 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 252 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 3 1%
Italy 2 <1%
Belgium 2 <1%
United Kingdom 2 <1%
Norway 1 <1%
Denmark 1 <1%
Sweden 1 <1%
Unknown 240 95%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 78 31%
Researcher 43 17%
Student > Master 38 15%
Student > Doctoral Student 18 7%
Student > Bachelor 17 7%
Other 31 12%
Unknown 27 11%
Readers by discipline Count As %
Agricultural and Biological Sciences 88 35%
Biochemistry, Genetics and Molecular Biology 64 25%
Medicine and Dentistry 19 8%
Immunology and Microbiology 8 3%
Computer Science 7 3%
Other 34 13%
Unknown 32 13%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 11. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 03 July 2015.
All research outputs
#2,734,557
of 22,659,164 outputs
Outputs from Methods in molecular biology
#525
of 13,019 outputs
Outputs of similar age
#22,462
of 244,041 outputs
Outputs of similar age from Methods in molecular biology
#36
of 473 outputs
Altmetric has tracked 22,659,164 research outputs across all sources so far. Compared to these this one has done well and is in the 87th percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 13,019 research outputs from this source. They receive a mean Attention Score of 3.3. This one has done particularly well, scoring higher than 95% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 244,041 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 90% of its contemporaries.
We're also able to compare this research output to 473 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 92% of its contemporaries.