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Preface.

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Cover of 'Preface.'

Table of Contents

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    Book Overview
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    Chapter 1 RNA-Protein Complexes and Interactions
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    Chapter 2 Identification of mRNA-Interacting Factors by MS2-TRAP (MS2-Tagged RNA Affinity Purification)
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    Chapter 3 Biotin–Streptavidin Affinity Purification of RNA–Protein Complexes Assembled In Vitro
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    Chapter 4 Detecting RNA–Protein Interaction Using End-Labeled Biotinylated RNA Oligonucleotides and Immunoblotting
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    Chapter 5 Purification of RNA–Protein Splicing Complexes Using a Tagged Protein from In Vitro Splicing Reaction Mixture
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    Chapter 6 Loading of Argonaute Protein with Small Duplex RNA in Cellular Extracts
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    Chapter 7 RNA-Protein Complexes and Interactions
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    Chapter 8 Single-Turnover Kinetics of Methyl Transfer to tRNA by Methyltransferases
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    Chapter 9 RNA-Protein Complexes and Interactions
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    Chapter 10 Northwestern Blot Analysis: Detecting RNA–Protein Interaction After Gel Separation of Protein Mixture
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    Chapter 11 RNA-Protein Complexes and Interactions
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    Chapter 12 RNA-Protein Complexes and Interactions
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    Chapter 13 RNA-Protein Complexes and Interactions
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    Chapter 14 Ribo-Proteomics Approach to Profile RNA–Protein and Protein–Protein Interaction Networks
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    Chapter 15 RNA-Protein Complexes and Interactions
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    Chapter 16 Evolution of Cell-Type-Specific RNA Aptamers Via Live Cell-Based SELEX
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    Chapter 17 RNA-Protein Complexes and Interactions
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    Chapter 18 RNA-Protein Complexes and Interactions
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    Chapter 19 Informational Suppression to Probe RNA:RNA Interactions in the Context of Ribonucleoproteins: U1 and 5′ Splice-Site Base-Pairing
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    Chapter 20 Analysis of Alternative Pre-RNA Splicing in the Mouse Retina Using a Fluorescent Reporter
Attention for Chapter 16: Evolution of Cell-Type-Specific RNA Aptamers Via Live Cell-Based SELEX
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Chapter title
Evolution of Cell-Type-Specific RNA Aptamers Via Live Cell-Based SELEX
Chapter number 16
Book title
RNA-Protein Complexes and Interactions
Published in
Methods in molecular biology, January 2016
DOI 10.1007/978-1-4939-3591-8_16
Pubmed ID
Book ISBNs
978-1-4939-3589-5, 978-1-4939-3591-8
Authors

Zhou, Jiehua, Rossi, John J., Jiehua Zhou, John J. Rossi

Abstract

Live cell-based SELEX (Systematic Evolution of Ligand EXponential enrichment) is a promising approach for identifying aptamers that can selectively bind to a cell-surface antigen or a particular target cell population. In particular, it offers a facile selection strategy for some special cell-surface proteins that are original glycosylated or heavily post-translationally modified, and are unavailable in their native/active conformation after in vitro expression and purification. In this chapter, we describe evolution of cell-type-specific RNA aptamers targeting the human CCR5 by combining the live cell-based SELEX strategy with high-throughput sequencing (HTS) and bioinformatics analysis.

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Mendeley readers

The data shown below were compiled from readership statistics for 5 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
China 1 20%
Unknown 4 80%

Demographic breakdown

Readers by professional status Count As %
Researcher 2 40%
Student > Ph. D. Student 1 20%
Unknown 2 40%
Readers by discipline Count As %
Agricultural and Biological Sciences 1 20%
Neuroscience 1 20%
Unknown 3 60%