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Plant Transposable Elements

Overview of attention for book
Cover of 'Plant Transposable Elements'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Historical Overview of Transposable Element Research
  3. Altmetric Badge
    Chapter 2 Distinguishing Variable Phenotypes from Variegation Caused by Transposon Activities
  4. Altmetric Badge
    Chapter 3 Using Transposons for Genetic Mosaic Analysis of Plant Development
  5. Altmetric Badge
    Chapter 4 Survey of Natural and Transgenic Gene Markers Used to Monitor Transposon Activity
  6. Altmetric Badge
    Chapter 5 Molecular Biology of Maize Ac / Ds Elements: An Overview
  7. Altmetric Badge
    Chapter 6 Gene Tagging with Engineered Ds Elements in Maize
  8. Altmetric Badge
    Chapter 7 Plant Regeneration Methods for Rapid Generation of a Large Scale Ds Transposant Population in Rice
  9. Altmetric Badge
    Chapter 8 Isolation of Sequences Flanking Ac Insertion Sites by Ac Casting
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    Chapter 9 Regulation of the Mutator System of Transposons in Maize
  11. Altmetric Badge
    Chapter 10 Using MuDR/Mu Transposons in Directed Tagging Strategies
  12. Altmetric Badge
    Chapter 11 Genetic and Molecular Analyses of UniformMu Transposon Insertion Lines
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    Chapter 12 Digestion–Ligation–Amplification (DLA): A Simple Genome Walking Method to Amplify Unknown Sequences Flanking Mutator ( Mu ) Transposons and Thereby Facilitate Gene Cloning
  14. Altmetric Badge
    Chapter 13 Molecular Genetics and Epigenetics of CACTA Elements
  15. Altmetric Badge
    Chapter 14 Activation Tagging Using the Maize En-I Transposon System for the Identification of Abiotic Stress Resistance Genes in Arabidopsis
  16. Altmetric Badge
    Chapter 15 Reverse Genetics in Rice Using Tos17
  17. Altmetric Badge
    Chapter 16 Identification and Applications of the Petunia Class II Act1/dTph1 Transposable Element System
  18. Altmetric Badge
    Chapter 17 Transposon Display: A Versatile Method for Transposon Tagging
  19. Altmetric Badge
    Chapter 18 Massive Indexed Parallel Identification of Transposon Flanking Sequences
  20. Altmetric Badge
    Chapter 19 Use of Next Generation Sequencing (NGS) Technologies for the Genome-Wide Detection of Transposition
  21. Altmetric Badge
    Chapter 20 Overview of Repeat Annotation and De Novo Repeat Identification
  22. Altmetric Badge
    Chapter 21 Computational Methods for Identification of DNA Transposons
  23. Altmetric Badge
    Chapter 22 TEnest 2.0: Computational Annotation and Visualization of Nested Transposable Elements
Attention for Chapter 19: Use of Next Generation Sequencing (NGS) Technologies for the Genome-Wide Detection of Transposition
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Chapter title
Use of Next Generation Sequencing (NGS) Technologies for the Genome-Wide Detection of Transposition
Chapter number 19
Book title
Plant Transposable Elements
Published in
Methods in molecular biology, January 2013
DOI 10.1007/978-1-62703-568-2_19
Pubmed ID
Book ISBNs
978-1-62703-567-5, 978-1-62703-568-2
Authors

Moaine Elbaidouri, Cristian Chaparro, Olivier Panaud, Elbaidouri, Moaine, Chaparro, Cristian, Panaud, Olivier

Abstract

Plant transposable elements are ubiquitous in eukaryotes. Their propensity to densely populate the genomes of many plants and animal species has put them in the focus of both structural and functional genomics. Although a number of bioinformatic software have been recently developed for the annotation of TEs in sequenced genomes, there are very few computational tools strictly dedicated to the identification of active TEs using genome-wide approaches. In this paper, we describe SearchTESV, a pipeline that we have developed to detect Transposable Elements-associated structural variants (TEASVs) using Next Generation Sequencing (NGS) technologies.

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X Demographics

The data shown below were collected from the profiles of 2 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 20 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 1 5%
Unknown 19 95%

Demographic breakdown

Readers by professional status Count As %
Researcher 9 45%
Student > Ph. D. Student 4 20%
Student > Bachelor 2 10%
Student > Postgraduate 2 10%
Student > Doctoral Student 1 5%
Other 0 0%
Unknown 2 10%
Readers by discipline Count As %
Agricultural and Biological Sciences 13 65%
Biochemistry, Genetics and Molecular Biology 2 10%
Pharmacology, Toxicology and Pharmaceutical Science 1 5%
Computer Science 1 5%
Medicine and Dentistry 1 5%
Other 0 0%
Unknown 2 10%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 09 September 2013.
All research outputs
#15,279,577
of 22,721,584 outputs
Outputs from Methods in molecular biology
#5,305
of 13,083 outputs
Outputs of similar age
#181,551
of 280,759 outputs
Outputs of similar age from Methods in molecular biology
#174
of 341 outputs
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So far Altmetric has tracked 13,083 research outputs from this source. They receive a mean Attention Score of 3.3. This one is in the 45th percentile – i.e., 45% of its peers scored the same or lower than it.
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