Chapter 1 From Gene-Scale to Genome-Scale Phylogenetics: the Data Flood In, but the Challenges Remain

Chapter 2 Phylogenomic Analysis by Chromosome Sorting and Painting

Chapter 3 Phylogenomics

Chapter 4 Construction of Radiation Hybrid Panels

Chapter 5 Survey Sequencing and Radiation Hybrid Mapping to Construct Comparative Maps

Chapter 6 Construction of High-Resolution Comparative Maps in Mammals Using BAC-End Sequences

Chapter 7 Amniote Phylogenomics: Testing Evolutionary Hypotheses with BAC Library Scanning and Targeted Clone Analysis of Large-Scale DNA Sequences from Reptiles

Chapter 8 Comparative Physical Mapping: Universal Overgo Hybridization Probe Design and BAC Library Hybridization

Chapter 9 Phylogenomic Resources at the UCSC Genome Browser

Chapter 10 Computational Tools for the Analysis of Rearrangements in Mammalian Genomes

Chapter 12 Sequencing and Phylogenomic Analysis of Whole Mitochondrial Genomes of Animals

Chapter 13 Retroposons: Genetic Footprints on the Evolutionary Paths of Life

Chapter 14 Phylogenomics

Chapter 15 Phylogenomics