Microarray Analysis of the Physical Genome

Chapter 1 Introduction

Chapter 3 Comparative genomic hybridization on spotted oligonucleotide microarrays.

Chapter 4 Comparative Genomic Hybridization by Representational Oligonucleotide Microarray Analysis

Chapter 5 Application of Oligonucleotides Arrays for Coincident Comparative Genomic Hybridization, Ploidy Status and Loss of Heterozygosity Studies in Human Cancers

Chapter 6 Molecular Inversion Probe Assay for Allelic Quantitation

Chapter 7 A Whole-Genome Amplification Protocol for a Wide Variety of DNAs, Including Those from Formalin-Fixed and Paraffin-Embedded Tissue

Chapter 8 Algorithms for Calling Gains and Losses in Array CGH Data

Chapter 9 Methylation analysis by microarray.

Chapter 10 Methylation Analysis by DNA Immunoprecipitation (MeDIP)

Chapter 11 Combining Chromatin Immunoprecipitation and Oligonucleotide Tiling Arrays (ChIP-Chip) for Functional Genomic Studies

Chapter 12 ChIP-Chip: Algorithms for Calling Binding Sites

Chapter 13 Mapping regulatory elements by DNaseI hypersensitivity chip (DNase-Chip).

Chapter 14 Microarray analysis of DNA replication timing.

Chapter 15 Integration of Diverse Microarray Data Types