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Comparative Genomics

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Attention for Chapter 11: Sequence-Based Synteny Analysis of Multiple Large Genomes
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Chapter title
Sequence-Based Synteny Analysis of Multiple Large Genomes
Chapter number 11
Book title
Comparative Genomics
Published in
Methods in molecular biology, January 2018
DOI 10.1007/978-1-4939-7463-4_11
Pubmed ID
Book ISBNs
978-1-4939-7461-0, 978-1-4939-7463-4
Authors

Daniel Doerr, Bernard M. E. Moret

Abstract

Current methods for synteny analysis provide only limited support to study large genomes at the sequence level. In this chapter, we describe a pipeline based on existing tools that, applied in a suitable fashion, enables synteny analysis of large genomic datasets. We give a hands-on description of each step of the pipeline using four avian genomes for data. We also provide integration scripts that simplify the conversion and setup of data between the different tools in the pipeline.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 12 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 12 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 4 33%
Researcher 2 17%
Student > Doctoral Student 2 17%
Student > Master 1 8%
Unknown 3 25%
Readers by discipline Count As %
Agricultural and Biological Sciences 4 33%
Biochemistry, Genetics and Molecular Biology 4 33%
Chemical Engineering 1 8%
Computer Science 1 8%
Immunology and Microbiology 1 8%
Other 0 0%
Unknown 1 8%