Algorithms for Next-Generation Sequencing Data

Chapter 1 Algorithms for Indexing Highly Similar DNA Sequences

Chapter 2 Full-Text Indexes for High-Throughput Sequencing

Chapter 3 Searching and Indexing Circular Patterns

Chapter 4 De Novo NGS Data Compression

Chapter 5 Cloud Storage-Management Techniques for NGS Data

Chapter 6 Probabilistic Models for Error Correction of Nonuniform Sequencing Data

Chapter 7 DNA-Seq Error Correction Based on Substring Indices

Chapter 8 Error Correction in Methylation Profiling From NGS Bisulfite Protocols

Chapter 9 Comparative Assessment of Alignment Algorithms for NGS Data: Features, Considerations, Implementations, and Future

Chapter 10 CUSHAW Suite: Parallel and Efficient Algorithms for NGS Read Alignment

Chapter 11 String-Matching and Alignment Algorithms for Finding Motifs in NGS Data

Chapter 12 The Contig Assembly Problem and Its Algorithmic Solutions

Chapter 13 An Efficient Approach to Merging Paired-End Reads and Incorporation of Uncertainties