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Algorithms in Bioinformatics

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Cover of 'Algorithms in Bioinformatics'

Table of Contents

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    Book Overview
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    Chapter 1 BicNET: Efficient Biclustering of Biological Networks to Unravel Non-Trivial Modules
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    Chapter 2 Simultaneous Optimization of both Node and Edge Conservation in Network Alignment via WAVE
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    Chapter 3 The Topological Profile of a Model of Protein Network Evolution Can Direct Model Improvement
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    Chapter 4 Algorithms for Regular Tree Grammar Network Search and Their Application to Mining Human-Viral Infection Patterns
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    Chapter 5 Orthology Relation and Gene Tree Correction: Complexity Results
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    Chapter 6 Finding a Perfect Phylogeny from Mixed Tumor Samples
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    Chapter 7 A Sub-quadratic Time and Space Complexity Solution for the Dated Tree Reconciliation Problem for Select Tree Topologies
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    Chapter 8 Maximum Parsimony Analysis of Gene Copy Number Changes
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    Chapter 9 Multiple-Ancestor Localization for Recently Admixed Individuals
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    Chapter 10 Association Mapping for Compound Heterozygous Traits Using Phenotypic Distance and Integer Programming
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    Chapter 11 Semi-nonparametric Modeling of Topological Domain Formation from Epigenetic Data
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    Chapter 12 Scrible: Ultra-Accurate Error-Correction of Pooled Sequenced Reads
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    Chapter 13 Jabba: Hybrid Error Correction for Long Sequencing Reads Using Maximal Exact Matches
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    Chapter 14 Optimizing Read Reversals for Sequence Compression
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    Chapter 15 Circular Sequence Comparison with q-grams
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    Chapter 16 Bloom Filter Trie – A Data Structure for Pan-Genome Storage
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    Chapter 17 A Filtering Approach for Alignment-Free Biosequences Comparison with Mismatches
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    Chapter 18 Models and Algorithms for Genome Rearrangement with Positional Constraints
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    Chapter 19 Sparse RNA Folding Revisited: Space-Efficient Minimum Free Energy Prediction
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    Chapter 20 A Sparsified Four-Russian Algorithm for RNA Folding
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    Chapter 21 Higher Classification Accuracy of Short Metagenomic Reads by Discriminative Spaced k-mers
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    Chapter 22 Graph-Theoretic Modelling of the Domain Chaining Problem
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    Chapter 23 Efficient Design of Compact Unstructured RNA Libraries Covering All k-mers
Attention for Chapter 16: Bloom Filter Trie – A Data Structure for Pan-Genome Storage
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Chapter title
Bloom Filter Trie – A Data Structure for Pan-Genome Storage
Chapter number 16
Book title
Algorithms in Bioinformatics
Published by
Springer, Berlin, Heidelberg, September 2015
DOI 10.1007/978-3-662-48221-6_16
Book ISBNs
978-3-66-248220-9, 978-3-66-248221-6

Guillaume Holley, Roland Wittler, Jens Stoye

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 24 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Germany 2 8%
France 1 4%
Unknown 21 88%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 6 25%
Researcher 6 25%
Other 3 13%
Lecturer > Senior Lecturer 3 13%
Student > Master 1 4%
Other 3 13%
Unknown 2 8%
Readers by discipline Count As %
Computer Science 13 54%
Agricultural and Biological Sciences 4 17%
Engineering 2 8%
Medicine and Dentistry 1 4%
Biochemistry, Genetics and Molecular Biology 1 4%
Other 0 0%
Unknown 3 13%