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RNA Folding

Overview of attention for book
RNA Folding
Springer US

Table of Contents

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    Book Overview
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    Chapter 1 Estimating RNA Secondary Structure Folding Free Energy Changes with efn2
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    Chapter 2 VarGibbs Usage in the Optimization of Nearest-Neighbor Parameters and Prediction of Melting Temperature of RNA Duplexes
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    Chapter 3 RNA Secondary Structure Thermodynamics
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    Chapter 4 RNA Secondary Structure Modeling Following the IPANEMAP Workflow.
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    Chapter 5 How Parameters Influence Shape -Directed Predictions
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    Chapter 6 Classified Dynamic Programming in RNA Structure Analysis.
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    Chapter 7 Classification and Identification of Non-canonical Base Pairs and Structural Motifs
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    Chapter 8 Modified Nucleotides and RNA Structure Prediction.
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    Chapter 9 How to do RNA-RNA Interaction Prediction? A Use-Case Driven Handbook Using IntaRNA
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    Chapter 10 LocARNA 2.0: Versatile Simultaneous Alignment and Folding of RNAs
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    Chapter 11 Evolutionary Structure Conservation and Covariance Scores
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    Chapter 12 Developing Complex RNA Design Applications in the Infrared Framework.
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    Chapter 13 A Guide to Computational Cotranscriptional Folding Featuring the SRP RNA
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    Chapter 14 Assessing the Quality of Cotranscriptional Folding Simulations
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    Chapter 15 The Multiscale Ernwin/SPQR RNA Structure Prediction Pipeline.
Attention for Chapter 2: VarGibbs Usage in the Optimization of Nearest-Neighbor Parameters and Prediction of Melting Temperature of RNA Duplexes
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Chapter title
VarGibbs Usage in the Optimization of Nearest-Neighbor Parameters and Prediction of Melting Temperature of RNA Duplexes
Chapter number 2
Book title
RNA Folding
Published in
Methods in molecular biology, January 2024
DOI 10.1007/978-1-0716-3519-3_2
Book ISBNs
978-1-07-163518-6, 978-1-07-163519-3
Authors

Ferreira, Izabela, Weber, Gerald

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