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Transposons and Retrotransposons

Overview of attention for book
Cover of 'Transposons and Retrotransposons'

Table of Contents

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    Book Overview
  2. Altmetric Badge
    Chapter 1 Study of Transposable Elements and Their Genomic Impact
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    Chapter 2 Bacterial Group II Introns: Identification and Mobility Assay.
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    Chapter 3 In Silico Methods to Identify Exapted Transposable Element Families. - PubMed - NCBI
  5. Altmetric Badge
    Chapter 4 Retrotransposon Capture Sequencing (RC-Seq): A Targeted, High-Throughput Approach to Resolve Somatic L1 Retrotransposition in Humans
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    Chapter 5 Long Interspersed Element Sequencing (L1-Seq): A Method to Identify Somatic LINE-1 Insertions in the Human Genome
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    Chapter 6 Combining Amplification Typing of L1 Active Subfamilies (ATLAS) with High-Throughput Sequencing
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    Chapter 7 RNA-Seq Analysis to Measure the Expression of SINE Retroelements
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    Chapter 8 Qualitative and Quantitative Assays of Transposition and Homologous Recombination of the Retrotransposon Tf1 in Schizosaccharomyces pombe
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    Chapter 9 LINE Retrotransposition Assays in Saccharomyces cerevisiae
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    Chapter 10 LINE-1 Cultured Cell Retrotransposition Assay.
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    Chapter 11 L1 Retrotransposition in Neural Progenitor Cells. - PubMed - NCBI
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    Chapter 12 Characterization of Engineered L1 Retrotransposition Events: The Recovery Method
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    Chapter 13 SINE Retrotransposition: Evaluation of Alu Activity and Recovery of De Novo Inserts.
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    Chapter 14 The Engineered SVA Trans-mobilization Assay.
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    Chapter 15 Detection of LINE-1 RNAs by Northern Blot. - PubMed - NCBI
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    Chapter 16 Monitoring Long Interspersed Nuclear Element 1 Expression During Mouse Embryonic Stem Cell Differentiation
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    Chapter 17 Immunodetection of Human LINE-1 Expression in Cultured Cells and Human Tissues.
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    Chapter 18 Cellular Localization of Engineered Human LINE-1 RNA and Proteins.
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    Chapter 19 Purification of L1-Ribonucleoprotein Particles (L1-RNPs) from Cultured Human Cells
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    Chapter 20 Characterization of L1-Ribonucleoprotein Particles.
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    Chapter 21 LEAP: L1 Element Amplification Protocol
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    Chapter 22 Biochemical Approaches to Study LINE-1 Reverse Transcriptase Activity In Vitro.
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    Chapter 23 Methylated DNA Immunoprecipitation Analysis of Mammalian Endogenous Retroviruses
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    Chapter 24 Profiling DNA Methylation and Hydroxymethylation at Retrotransposable Elements
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    Chapter 25 A Large-Scale Functional Screen to Identify Epigenetic Repressors of Retrotransposon Expression
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    Chapter 26 Reprogramming of Human Fibroblasts to Induced Pluripotent Stem Cells with Sleeping Beauty Transposon-Based Stable Gene Delivery
Attention for Chapter 17: Immunodetection of Human LINE-1 Expression in Cultured Cells and Human Tissues.
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About this Attention Score

  • Above-average Attention Score compared to outputs of the same age (53rd percentile)
  • Good Attention Score compared to outputs of the same age and source (77th percentile)

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Chapter title
Immunodetection of Human LINE-1 Expression in Cultured Cells and Human Tissues.
Chapter number 17
Book title
Transposons and Retrotransposons
Published in
Methods in molecular biology, January 2016
DOI 10.1007/978-1-4939-3372-3_17
Pubmed ID
Book ISBNs
978-1-4939-3370-9, 978-1-4939-3372-3
Authors

Reema Sharma, Nemanja Rodić, Kathleen H. Burns M.D., Ph.D., Martin S. Taylor, Kathleen H. Burns

Editors

Jose L. Garcia-Pérez

Abstract

Long interspersed element-1 (LINE-1) is the only active protein-coding retrotransposon in humans. It is not expressed in somatic tissue but is aberrantly expressed in a wide variety of human cancers. ORF1p protein is the most robust indicator of LINE-1 expression; the protein accumulates in large quantities in cellular cytoplasm. Recently, monoclonal antibodies have allowed more complete characterizations of ORF1p expression and indicated potential for developing ORF1p as a clinical biomarker. Here, we describe a mouse monoclonal antibody specific for human LINE-1 ORF1p and its application in immunofluorescence and immunohistochemistry of both cells and human tissues. We also describe detection of tagged LINE-1 ORF2p via immunofluorescence. These general methods may be readily adapted to use with many other proteins and antibodies.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 22 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 22 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 6 27%
Student > Master 4 18%
Professor > Associate Professor 2 9%
Researcher 2 9%
Student > Doctoral Student 1 5%
Other 4 18%
Unknown 3 14%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 12 55%
Agricultural and Biological Sciences 2 9%
Business, Management and Accounting 1 5%
Unspecified 1 5%
Economics, Econometrics and Finance 1 5%
Other 1 5%
Unknown 4 18%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 3. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 27 February 2022.
All research outputs
#13,161,652
of 23,213,531 outputs
Outputs from Methods in molecular biology
#3,353
of 13,306 outputs
Outputs of similar age
#181,515
of 395,422 outputs
Outputs of similar age from Methods in molecular biology
#311
of 1,471 outputs
Altmetric has tracked 23,213,531 research outputs across all sources so far. This one is in the 42nd percentile – i.e., 42% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,306 research outputs from this source. They receive a mean Attention Score of 3.4. This one has gotten more attention than average, scoring higher than 73% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 395,422 tracked outputs that were published within six weeks on either side of this one in any source. This one has gotten more attention than average, scoring higher than 53% of its contemporaries.
We're also able to compare this research output to 1,471 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 77% of its contemporaries.