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Transposons and Retrotransposons

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Cover of 'Transposons and Retrotransposons'

Table of Contents

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    Book Overview
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    Chapter 1 Study of Transposable Elements and Their Genomic Impact
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    Chapter 2 Bacterial Group II Introns: Identification and Mobility Assay.
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    Chapter 3 In Silico Methods to Identify Exapted Transposable Element Families. - PubMed - NCBI
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    Chapter 4 Retrotransposon Capture Sequencing (RC-Seq): A Targeted, High-Throughput Approach to Resolve Somatic L1 Retrotransposition in Humans
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    Chapter 5 Long Interspersed Element Sequencing (L1-Seq): A Method to Identify Somatic LINE-1 Insertions in the Human Genome
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    Chapter 6 Combining Amplification Typing of L1 Active Subfamilies (ATLAS) with High-Throughput Sequencing
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    Chapter 7 RNA-Seq Analysis to Measure the Expression of SINE Retroelements
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    Chapter 8 Qualitative and Quantitative Assays of Transposition and Homologous Recombination of the Retrotransposon Tf1 in Schizosaccharomyces pombe
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    Chapter 9 LINE Retrotransposition Assays in Saccharomyces cerevisiae
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    Chapter 10 LINE-1 Cultured Cell Retrotransposition Assay.
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    Chapter 11 L1 Retrotransposition in Neural Progenitor Cells. - PubMed - NCBI
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    Chapter 12 Characterization of Engineered L1 Retrotransposition Events: The Recovery Method
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    Chapter 13 SINE Retrotransposition: Evaluation of Alu Activity and Recovery of De Novo Inserts.
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    Chapter 14 The Engineered SVA Trans-mobilization Assay.
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    Chapter 15 Detection of LINE-1 RNAs by Northern Blot. - PubMed - NCBI
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    Chapter 16 Monitoring Long Interspersed Nuclear Element 1 Expression During Mouse Embryonic Stem Cell Differentiation
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    Chapter 17 Immunodetection of Human LINE-1 Expression in Cultured Cells and Human Tissues.
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    Chapter 18 Cellular Localization of Engineered Human LINE-1 RNA and Proteins.
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    Chapter 19 Purification of L1-Ribonucleoprotein Particles (L1-RNPs) from Cultured Human Cells
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    Chapter 20 Characterization of L1-Ribonucleoprotein Particles.
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    Chapter 21 LEAP: L1 Element Amplification Protocol
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    Chapter 22 Biochemical Approaches to Study LINE-1 Reverse Transcriptase Activity In Vitro.
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    Chapter 23 Methylated DNA Immunoprecipitation Analysis of Mammalian Endogenous Retroviruses
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    Chapter 24 Profiling DNA Methylation and Hydroxymethylation at Retrotransposable Elements
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    Chapter 25 A Large-Scale Functional Screen to Identify Epigenetic Repressors of Retrotransposon Expression
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    Chapter 26 Reprogramming of Human Fibroblasts to Induced Pluripotent Stem Cells with Sleeping Beauty Transposon-Based Stable Gene Delivery
Attention for Chapter 11: L1 Retrotransposition in Neural Progenitor Cells. - PubMed - NCBI
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Chapter title
L1 Retrotransposition in Neural Progenitor Cells. - PubMed - NCBI
Chapter number 11
Book title
Transposons and Retrotransposons
Published in
Methods in molecular biology, January 2016
DOI 10.1007/978-1-4939-3372-3_11
Pubmed ID
Book ISBNs
978-1-4939-3370-9, 978-1-4939-3372-3
Authors

Muotri, Alysson R, Alysson R. Muotri Ph.D., Alysson R. Muotri

Editors

Jose L. Garcia-Pérez

Abstract

Long interspersed nucleotide element 1 (LINE-1 or L1) is a family of non-LTR retrotransposons that can replicate and reintegrate into the host genome. L1s have considerably influenced mammalian genome evolution by retrotransposing during germ cell development or early embryogenesis, leading to massive genome expansion. For many years, L1 retrotransposons were viewed as a selfish DNA parasite that had no contribution in somatic cells. Historically, L1s were thought to only retrotranspose during gametogenesis and in neoplastic processes, but recent studies have shown that L1s are extremely active in the mouse, rat, and human neuronal progenitor cells (NPCs). These de novo L1 insertions can impact neuronal transcriptional expression, creating unique transcriptomes of individual neurons, possibly contributing to the uniqueness of the individual cognition and mental disorders in humans.

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X Demographics

The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 95 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United Kingdom 1 1%
Spain 1 1%
United States 1 1%
Australia 1 1%
Unknown 91 96%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 22 23%
Researcher 21 22%
Student > Bachelor 12 13%
Student > Master 12 13%
Other 5 5%
Other 13 14%
Unknown 10 11%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 32 34%
Agricultural and Biological Sciences 31 33%
Medicine and Dentistry 8 8%
Neuroscience 6 6%
Immunology and Microbiology 1 1%
Other 7 7%
Unknown 10 11%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 20 February 2016.
All research outputs
#15,359,595
of 22,849,304 outputs
Outputs from Methods in molecular biology
#5,347
of 13,127 outputs
Outputs of similar age
#230,889
of 393,600 outputs
Outputs of similar age from Methods in molecular biology
#545
of 1,470 outputs
Altmetric has tracked 22,849,304 research outputs across all sources so far. This one is in the 22nd percentile – i.e., 22% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,127 research outputs from this source. They receive a mean Attention Score of 3.4. This one is in the 44th percentile – i.e., 44% of its peers scored the same or lower than it.
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We're also able to compare this research output to 1,470 others from the same source and published within six weeks on either side of this one. This one is in the 48th percentile – i.e., 48% of its contemporaries scored the same or lower than it.