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Proteome Bioinformatics

Overview of attention for book
Cover of 'Proteome Bioinformatics'

Table of Contents

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    Book Overview
  2. Altmetric Badge
    Chapter 1 An Introduction to Proteome Bioinformatics.
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    Chapter 2 Proteomic Data Storage and Sharing.
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    Chapter 3 Choosing an Optimal Database for Protein Identification from Tandem Mass Spectrometry Data.
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    Chapter 4 Label-Based and Label-Free Strategies for Protein Quantitation.
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    Chapter 5 TMT One-Stop Shop: From Reliable Sample Preparation to Computational Analysis Platform.
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    Chapter 6 Unassigned MS/MS Spectra: Who Am I?
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    Chapter 7 Methods to Calculate Spectrum Similarity.
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    Chapter 8 Proteotypic Peptides and Their Applications.
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    Chapter 9 Statistical Evaluation of Labeled Comparative Profiling Proteomics Experiments Using Permutation Test.
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    Chapter 10 De Novo Peptide Sequencing: Deep Mining of High-Resolution Mass Spectrometry Data.
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    Chapter 11 Phylogenetic Analysis Using Protein Mass Spectrometry.
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    Chapter 12 Bioinformatics Methods to Deduce Biological Interpretation from Proteomics Data.
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    Chapter 13 A Systematic Bioinformatics Approach to Identify High Quality Mass Spectrometry Data and Functionally Annotate Proteins and Proteomes.
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    Chapter 14 Network Tools for the Analysis of Proteomic Data.
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    Chapter 15 Determining the Significance of Protein Network Features and Attributes Using Permutation Testing.
  17. Altmetric Badge
    Chapter 16 Bioinformatics Tools and Resources for Analyzing Protein Structures.
  18. Altmetric Badge
    Chapter 17 In Silico Approach to Identify Potential Inhibitors for Axl-Gas6 Signaling.
Attention for Chapter 12: Bioinformatics Methods to Deduce Biological Interpretation from Proteomics Data.
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Chapter title
Bioinformatics Methods to Deduce Biological Interpretation from Proteomics Data.
Chapter number 12
Book title
Proteome Bioinformatics
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4939-6740-7_12
Pubmed ID
Book ISBNs
978-1-4939-6738-4, 978-1-4939-6740-7
Authors

Krishna Patel, Manika Singh, Harsha Gowda

Editors

Shivakumar Keerthikumar, Suresh Mathivanan

Abstract

High-throughput proteomics studies generate large amounts of data. Biological interpretation of these large scale datasets is often challenging. Over the years, several computational tools have been developed to facilitate meaningful interpretation of large-scale proteomics data. In this chapter, we describe various analyses that can be performed and bioinformatics tools and resources that enable users to do the analyses. Many Web-based and stand-alone tools are relatively user-friendly and can be used by most biologists without significant assistance.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 26 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 26 100%

Demographic breakdown

Readers by professional status Count As %
Other 3 12%
Student > Ph. D. Student 3 12%
Professor > Associate Professor 2 8%
Professor 2 8%
Student > Master 2 8%
Other 2 8%
Unknown 12 46%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 4 15%
Agricultural and Biological Sciences 3 12%
Pharmacology, Toxicology and Pharmaceutical Science 2 8%
Chemical Engineering 1 4%
Computer Science 1 4%
Other 1 4%
Unknown 14 54%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 27 February 2018.
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#18,493,111
of 22,914,829 outputs
Outputs from Methods in molecular biology
#7,927
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Outputs of similar age
#310,545
of 420,479 outputs
Outputs of similar age from Methods in molecular biology
#692
of 1,074 outputs
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