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Plant Iron Homeostasis

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Cover of 'Plant Iron Homeostasis'

Table of Contents

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    Book Overview
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    Chapter 1 High-Throughput Plant Gene Expression Analysis by 384-Format Reverse Transcription-Quantitative PCR for Investigating Plant Iron Homeostasis.
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    Chapter 2 The Use of Spectral Imaging to Follow the Iron and pH-Dependent Accumulation of Fluorescent Coumarins.
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    Chapter 3 Assay of Fe(III) Chelate Reductase Activity in Arabidopsis thaliana Root.
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    Chapter 4 An Adapted Protocol for Quantitative Rhizosphere Acidification Assay.
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    Chapter 5 Techniques to Study Common Root Responses to Beneficial Microbes and Iron Deficiency.
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    Chapter 6 Imaging and Quantifying the Endocytosis of IRON-REGULATED TRANSPORTER1 from Arabidopsis.
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    Chapter 7 Label-Free Quantitative Proteomics in Plant.
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    Chapter 8 Chromatin Immunoprecipitation (ChIP) to Study the Transcriptional Regulatory Network that Controls Iron Homeostasis in Arabidopsis thaliana.
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    Chapter 9 Comprehensive Survey of ChIP-Seq Datasets to Identify Candidate Iron Homeostasis Genes Regulated by Chromatin Modifications.
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    Chapter 10 Arabidopsis Micro-grafting to Study the Systemic Signaling of Nutrient Status
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    Chapter 11 Advances in Iron Retrograde Signaling Mechanisms and Uptake Regulation in Photosynthetic Organisms.
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    Chapter 12 Functional Analysis of Chloroplast Iron Uptake and Homeostasis.
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    Chapter 13 Perls/DAB Staining to Examine Iron Distribution in Arabidopsis Embryos
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    Chapter 14 Visualizing Metal Distribution in Plants Using Synchrotron X-Ray Fluorescence Microscopy Techniques
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    Chapter 15 A Simple Semi-hydroponic System for Studying Iron Homeostasis in Maize.
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    Chapter 16 Optimizing Fe Nutrition for Algal Growth.
Attention for Chapter 9: Comprehensive Survey of ChIP-Seq Datasets to Identify Candidate Iron Homeostasis Genes Regulated by Chromatin Modifications.
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Chapter title
Comprehensive Survey of ChIP-Seq Datasets to Identify Candidate Iron Homeostasis Genes Regulated by Chromatin Modifications.
Chapter number 9
Book title
Plant Iron Homeostasis
Published in
Methods in molecular biology, January 2023
DOI 10.1007/978-1-0716-3183-6_9
Pubmed ID
37166596
Book ISBNs
978-1-07-163182-9, 978-1-07-163183-6
Authors

Yu, Yang, Wang, Yuxin, Yao, Zhujun, Wang, Ziqin, Xia, Zijun, Lee, Joohyun

Abstract

Vital biochemical reactions including photosynthesis to respiration require iron, which should be tightly regulated. Although increasing evidence reveals the importance of epigenetic regulation in gene expression and signaling, the role of histone modifications and chromatin remodeling in plant iron homeostasis is not well understood. In this study, we surveyed publicly available ChIP-seq datasets of Arabidopsis wild-type and mutants defective in key enzymes of histone modification and chromatin remodeling and compared the deposition of epigenetic marks on loci of genes involved in iron regulation. Based on the analysis, we compiled a comprehensive list of iron homeostasis genes with differential enrichment of various histone modifications. This report will provide a resource for future studies to investigate epigenetic regulatory mechanisms of iron homeostasis in plants.

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Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 11 May 2023.
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#21,074,123
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