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Transposable Elements

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Cover of 'Transposable Elements'

Table of Contents

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    Book Overview
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    Chapter 1 An Overview of Best Practices for Transposable Element Identification, Classification, and Annotation in Eukaryotic Genomes
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    Chapter 2 Assembly-Free Detection and Quantification of Transposable Elements with dnaPipeTE
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    Chapter 3 Detecting Horizontal Transfer of Transposons
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    Chapter 4 Genotyping of Transposable Element Insertions Segregating in Human Populations Using Short-Read Realignments
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    Chapter 5 A Pangenome Approach to Detect and Genotype TE Insertion Polymorphisms.
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    Chapter 6 Experimental Validation of Transposable Element Insertions Using the Polymerase Chain Reaction (PCR).
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    Chapter 7 Quantification of LINE-1 RNA Expression from Bulk RNA-seq Using L1EM
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    Chapter 8 Genome-Wide Young L1 Methylation Profiling by bs-ATLAS-seq
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    Chapter 9 Nanopore Sequencing to Identify Transposable Element Insertions and Their Epigenetic Modifications
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    Chapter 10 Targeted Nanopore Resequencing and Methylation Analysis of LINE-1 Retrotransposons
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    Chapter 11 Inferring Protein-DNA Binding Profiles at Interspersed Repeats Using HiChIP and PAtChER
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    Chapter 12 Affinity-Based Interactome Analysis of Endogenous LINE-1 Macromolecules
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    Chapter 13 LINE-1 Retrotransposition Assays in Embryonic Stem Cells
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    Chapter 14 Experimental Approaches to Study Somatic Transposition in Drosophila Using Whole-Genome DNA Sequencing.
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    Chapter 15 Precise and Scarless Insertion of Transposable Elements by Cas9-Mediated Genome Engineering
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    Chapter 16 Epigenetic Manipulation of Transposable and Repetitive Elements
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    Chapter 17 Genetic Knockout of TE Insertions by CRISPR-Cas9
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Title
Transposable Elements
Published by
Springer US, December 2022
DOI 10.1007/978-1-0716-2883-6
ISBNs
978-1-07-162882-9, 978-1-07-162883-6
Editors

Branco, Miguel R., de Mendoza Soler, Alexandre

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