Haplotyping

Chapter 1 Interrogating the Human Diplome: Computational Methods, Emerging Applications, and Challenges

Chapter 2 Targeted Locus Amplification and Haplotyping

Chapter 3 Full-Length Transcript Phasing with Third-Generation Sequencing

Chapter 4 Large-Scale Complete Sequencing and Haplotyping of 1–10 kb DNA Molecules Using Short Massively Parallel Reads

Chapter 5 Accurate Sequencing and Haplotyping from 10 Cells Using Long Fragment Read (LFR) Technology

Chapter 6 Low-Cost Genome-Scale Phasing with Barcode-Linked Sequencing

Chapter 7 A Simple Cost-Effective Method for Whole-Genome Sequencing, Haplotyping, and Assembly

Chapter 8 Read-Based Phasing and Analysis of Phased Variants with WhatsHap

Chapter 10 Determining Complete Chromosomal Haplotypes by mLinker

Chapter 11 Haplotyping-Assisted Diploid Assembly and Variant Detection with Linked Reads

Chapter 12 Chromosome-Length Haplotypes with StrandPhaseR and Strand-seq

Chapter 13 Gamete Binning to Achieve Haplotype-Resolved Genome Assembly

Chapter 14 Phasing DNA Methylation

Chapter 15 Analysis of 1276 Haplotype-Resolved Genomes Allows Characterization of Cis- and Trans-Abundant Genes

Chapter 16 Phased Genome Assemblies

Chapter 17 Haplotype-Assisted Noninvasive Prenatal Diagnosis of Genetic Diseases by Massively Parallel Sequencing of Maternal Plasma Cell-Free DNA