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Computational Methods in Systems Biology

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Cover of 'Computational Methods in Systems Biology'

Table of Contents

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    Book Overview
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    Chapter 1 Algebraic Biochemistry: A Framework for Analog Online Computation in Cells
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    Chapter 2 Abstract Simulation of Reaction Networks via Boolean Networks
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    Chapter 3 Abstraction-Based Segmental Simulation of Chemical Reaction Networks
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    Chapter 4 Qualitative Dynamics of Chemical Reaction Networks: An Investigation Using Partial Tropical Equilibrations
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    Chapter 5 Prioritization of Candidate Genes Through Boolean Networks
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    Chapter 6 Variable Stabilisation in Boolean Monotonic Model Pools
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    Chapter 7 Variable-Depth Simulation of Most Permissive Boolean Networks
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    Chapter 8 Minimal Trap Spaces of Logical Models are Maximal Siphons of Their Petri Net Encoding
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    Chapter 9 Stability Versus Meta-stability in a Skin Microbiome Model
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    Chapter 10 Exact Linear Reduction for Rational Dynamical Systems
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    Chapter 11 Limit Cycle Analysis of a Class of Hybrid Gene Regulatory Networks
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    Chapter 12 Bayesian Learning of Effective Chemical Master Equations in Crowded Intracellular Conditions
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    Chapter 13 Probabilistic Multivariate Early Warning Signals
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    Chapter 14 MobsPy: A Meta-species Language for Chemical Reaction Networks
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    Chapter 15 Automated Generation of Conditional Moment Equations for Stochastic Reaction Networks
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    Chapter 16 An Extension of ERODE to Reduce Boolean Networks By Backward Boolean Equivalence
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    Chapter 17 eBCSgen 2.0: Modelling and Analysis of Regulated Rule-Based Systems
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Title
Computational Methods in Systems Biology
Published by
Springer International Publishing, August 2022
DOI 10.1007/978-3-031-15034-0
ISBNs
978-3-03-115033-3, 978-3-03-115034-0
Editors

Petre, Ion, Păun, Andrei

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