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Nanopore Sequencing

Overview of attention for book
Cover of 'Nanopore Sequencing'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 The Current State of Nanopore Sequencing
  3. Altmetric Badge
    Chapter 2 Hybrid Genome Assembly of Short and Long Reads in Galaxy
  4. Altmetric Badge
    Chapter 3 Microbial Genome Sequencing and Assembly Using Nanopore Sequencers
  5. Altmetric Badge
    Chapter 4 De Novo Genome Assembly of Japanese Black Cattle as Model of an Economically Relevant Animal
  6. Altmetric Badge
    Chapter 5 How to Sequence and Assemble Plant Genomes
  7. Altmetric Badge
    Chapter 6 Detection of DNA Modification Using Nanopore Sequencers
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    Chapter 7 Ultralow-Input Genome Library Preparation for Nanopore Sequencing with Droplet MDA
  9. Altmetric Badge
    Chapter 8 The Method of Eliminating the Wolbachia Endosymbiont Genomes from Insect Samples Prior to a Long-Read Sequencing
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    Chapter 9 A Nanopore Sequencing Course for Graduate School Curriculum
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    Chapter 10 A Guide to Sequencing for Long Repetitive Regions
  12. Altmetric Badge
    Chapter 11 Analysis of Tandem Repeat Expansions Using Long DNA Reads.
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    Chapter 12 Finding Rearrangements in Nanopore DNA Reads with LAST and dnarrange.
  14. Altmetric Badge
    Chapter 13 Long-Read Whole-Genome Sequencing Using a Nanopore Sequencer and Detection of Structural Variants in Cancer Genomes.
  15. Altmetric Badge
    Chapter 14 Full-Length 16S rRNA Gene Analysis Using Long-Read Nanopore Sequencing for Rapid Identification of Bacteria from Clinical Specimens.
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    Chapter 15 Nanopore Sequencing Data Analysis of 16S rRNA Genes Using the GenomeSync-GSTK System.
  17. Altmetric Badge
    Chapter 16 Genomic Epidemiological Analysis of Antimicrobial-Resistant Bacteria with Nanopore Sequencing.
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    Chapter 17 Rapid and Comprehensive Identification of Nontuberculous Mycobacteria.
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    Chapter 18 Long-Read Single-Cell Sequencing Using scCOLOR-seq.
  20. Altmetric Badge
    Chapter 19 Unfolding the Bacterial Transcriptome Landscape Using Oxford Nanopore Technology Direct RNA Sequencing.
  21. Altmetric Badge
    Chapter 20 Nanopore Direct RNA Sequencing of Monosome- and Polysome-Bound RNA.
  22. Altmetric Badge
    Chapter 21 RNA Modification Detection Using Nanopore Direct RNA Sequencing and nanoDoc2.
Attention for Chapter 11: Analysis of Tandem Repeat Expansions Using Long DNA Reads.
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Chapter title
Analysis of Tandem Repeat Expansions Using Long DNA Reads.
Chapter number 11
Book title
Nanopore Sequencing
Published in
Methods in molecular biology, January 2023
DOI 10.1007/978-1-0716-2996-3_11
Pubmed ID
36781727
Book ISBNs
978-1-07-162995-6, 978-1-07-162996-3
Authors

Mitsuhashi, Satomi, Frith, Martin C, Frith, Martin C.

Abstract

Abnormal expansion or shortening of tandem repeats can cause a variety of genetic diseases. The use of long DNA reads has facilitated the analysis of disease-causing repeats in the human genome. Long read sequencers enable us to directly analyze repeat length and sequence content by covering whole repeats; they are therefore considered suitable for the analysis of long tandem repeats. Here, we describe an expanded repeat analysis using target sequencing data produced by the Oxford Nanopore Technologies (hereafter referred to as ONT) nanopore sequencer.

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 Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 14 February 2023.
All research outputs
#15,712,362
of 23,351,247 outputs
Outputs from Methods in molecular biology
#5,500
of 13,337 outputs
Outputs of similar age
#226,290
of 426,097 outputs
Outputs of similar age from Methods in molecular biology
#161
of 391 outputs
Altmetric has tracked 23,351,247 research outputs across all sources so far. This one is in the 22nd percentile – i.e., 22% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,337 research outputs from this source. They receive a mean Attention Score of 3.4. This one is in the 44th percentile – i.e., 44% of its peers scored the same or lower than it.
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We're also able to compare this research output to 391 others from the same source and published within six weeks on either side of this one. This one is in the 38th percentile – i.e., 38% of its contemporaries scored the same or lower than it.

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