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Bioinformatics for DNA Sequence Analysis

Overview of attention for book
Bioinformatics for DNA Sequence Analysis
Humana Press

Table of Contents

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    Book Overview
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    Chapter 1 Similarity Searching Using BLAST
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    Chapter 2 Gene Orthology Assessment with OrthologID
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    Chapter 3 Multiple Alignment of DNA Sequences with MAFFT
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    Chapter 4 SeqVis: A Tool for Detecting Compositional Heterogeneity Among Aligned Nucleotide Sequences
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    Chapter 5 Selection of Models of DNA Evolution with jModelTest
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    Chapter 6 Estimating maximum likelihood phylogenies with PhyML.
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    Chapter 7 Trees from trees: construction of phylogenetic supertrees using clann.
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    Chapter 8 Detecting signatures of selection from DNA sequences using Datamonkey.
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    Chapter 9 Recombination Detection and Analysis Using RDP3
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    Chapter 10 Bioinformatics for DNA Sequence Analysis
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    Chapter 11 Genetic Code Prediction for Metazoan Mitochondria with GenDecoder
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    Chapter 12 Computational gene annotation in new genome assemblies using GeneID.
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    Chapter 13 Promoter Analysis: Gene Regulatory Motif Identification with A-GLAM
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    Chapter 14 Analysis of Genomic DNA with the UCSC Genome Browser
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    Chapter 15 Mining for SNPs and SSRs Using SNPServer, dbSNP and SSR Taxonomy Tree
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    Chapter 16 Analysis of Transposable Element Sequences Using CENSOR and RepeatMasker
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    Chapter 17 DNA Sequence Polymorphism Analysis Using DnaSP
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