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DNA Repair Protocols

Overview of attention for book
Cover of 'DNA Repair Protocols'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 DNA Repair: Front and Center and Not Going Away!
  3. Altmetric Badge
    Chapter 2 Identification of Genes Required for Damage Survival Using a Cell-Based RNAi Screen Against the Drosophila Genome.
  4. Altmetric Badge
    Chapter 3 Isolating Genes Involved with Genotoxic Drug Response in the Nematode Caenorhabditis elegans Using Genome-Wide RNAi Screening
  5. Altmetric Badge
    Chapter 4 Establishment of the DNA Repair-Defective Mutants in DT40 Cells
  6. Altmetric Badge
    Chapter 5 Electrophoretic Mobility Shift Assays for Protein–DNA Complexes Involved in DNA Repair
  7. Altmetric Badge
    Chapter 6 The Comet Assay: A Sensitive Genotoxicity Test for the Detection of DNA Damage and Repair
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    Chapter 7 Detection of DNA damage by comet fluorescence in situ hybridization.
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    Chapter 8 Quantitative DNA Damage and Repair Measurement with the Yeast Comet Assay
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    Chapter 9 Analysis of DNA damage and repair in nuclear and mitochondrial DNA of animal cells using quantitative PCR.
  11. Altmetric Badge
    Chapter 10 In vitro DNA mismatch repair in human cells.
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    Chapter 11 Eukaryotic DNA Mismatch Repair In Vitro
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    Chapter 12 Immuno-Slot Blot Assay for Detection of UVR-Mediated DNA Damage
  14. Altmetric Badge
    Chapter 13 Quantification of DNA Photoproducts in Mammalian Cell DNA Using Radioimmunoassay
  15. Altmetric Badge
    Chapter 14 Measuring the Formation and Repair of UV Damage at the DNA Sequence Level by Ligation-Mediated PCR
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    Chapter 15 Construction of plasmids containing site-specific DNA interstrand cross-links for biochemical and cell biological studies.
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    Chapter 16 Replication-coupled DNA interstrand cross-link repair in Xenopus egg extracts.
  18. Altmetric Badge
    Chapter 17 DNA Repair Protocols
  19. Altmetric Badge
    Chapter 18 Using Arabidopsis Cell Extracts to Monitor Repair of DNA Base Damage In Vitro
  20. Altmetric Badge
    Chapter 19 In Vitro Monitoring of Base Excision Repair in Saccharomyces cerevisiae
  21. Altmetric Badge
    Chapter 20 Mitochondrial Base Excision Repair Assays
  22. Altmetric Badge
    Chapter 21 O -Hydroxylamine-Coupled Alkaline Gel Electrophoresis Assay for the Detection and Measurement of DNA Single-Strand Breaks
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    Chapter 22 DNA double-strand break damage and repair assessed by pulsed-field gel electrophoresis.
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    Chapter 23 Quantitative Amplification of Single-Stranded DNA
  25. Altmetric Badge
    Chapter 24 Simple, Non-radioactive Measurement of Single-Stranded DNA at Telomeric, Sub-telomeric, and Genomic Loci in Budding Yeast
  26. Altmetric Badge
    Chapter 25 Monitoring DNA Recombination Initiated by HO Endonuclease.
  27. Altmetric Badge
    Chapter 26 Monitoring I-SceI-Induced Double-Strand Break Repair in DT40 Cells
  28. Altmetric Badge
    Chapter 27 I-SceI-Based Assays to Examine Distinct Repair Outcomes of Mammalian Chromosomal Double Strand Breaks.
  29. Altmetric Badge
    Chapter 28 Studying Repair of a Single Protein-Bound Nick In Vivo Using the Flp-Nick System
  30. Altmetric Badge
    Chapter 29 Measurement of Diversification in the Immunoglobulin Light Chain Gene of DT40 Cells
  31. Altmetric Badge
    Chapter 30 Live Cell Microscopy of DNA Damage Response in Saccharomyces cerevisiae
  32. Altmetric Badge
    Chapter 31 Use of gene targeting to study recombination in Mammalian cell DNA repair mutants.
  33. Altmetric Badge
    Chapter 32 In Vitro Rejoining of Double Strand Breaks in Genomic DNA
  34. Altmetric Badge
    Chapter 33 An in vitro DNA double-strand break repair assay based on end-joining of defined duplex oligonucleotides.
  35. Altmetric Badge
    Chapter 34 Assays of Bypass Replication of Genotoxic Lesions in Cell-Free Extracts
  36. Altmetric Badge
    Chapter 35 Quantitative measurement of translesion DNA synthesis in Mammalian cells.
  37. Altmetric Badge
    Chapter 36 Detection of PCNA Modifications in Saccharomyces cerevisiae
  38. Altmetric Badge
    Chapter 37 In Vitro PCNA Modification Assays
  39. Altmetric Badge
    Chapter 38 Analysis of Inhibition of DNA Replication in Irradiated Cells Using the SV40 Based In Vitro Assay of DNA Replication
  40. Altmetric Badge
    Chapter 39 CHK1 Kinase Activity Assay
  41. Altmetric Badge
    Chapter 40 Histone H2AX Phosphorylation: A Marker for DNA Damage.
Attention for Chapter 2: Identification of Genes Required for Damage Survival Using a Cell-Based RNAi Screen Against the Drosophila Genome.
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  • High Attention Score compared to outputs of the same age and source (85th percentile)

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Chapter title
Identification of Genes Required for Damage Survival Using a Cell-Based RNAi Screen Against the Drosophila Genome.
Chapter number 2
Book title
DNA Repair Protocols
Published in
Methods in molecular biology, July 2012
DOI 10.1007/978-1-61779-998-3_2
Pubmed ID
Book ISBNs
978-1-61779-997-6, 978-1-61779-998-3
Authors

Ravi D, Bishop AJ, Lotte Bjergbæk, Dashnamoorthy Ravi, Alexander James Roy Bishop, Ravi, Dashnamoorthy, Bishop, Alexander James Roy

Abstract

Exposure to DNA-damaging agents invokes biological responses necessary for damage recovery and cell survival. Despite the presence of intact DNA repair pathways, lack of certain other biological pathways has been shown to sensitize cells to DNA-damaging agents' exposure. It is likely that following DNA damage a complex interplay between DNA repair pathways and other biological pathways might be required to ensure cell survival. In this chapter, we describe a high-throughput method for the identification of genes essential for cell survival following DNA damage by using a cell-based assay to measure viability in combination with an RNA interference-based genome-wide screening experiment.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 4 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 4 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 1 25%
Researcher 1 25%
Unknown 2 50%
Readers by discipline Count As %
Agricultural and Biological Sciences 1 25%
Unknown 3 75%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 6. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 12 September 2012.
All research outputs
#5,709,040
of 22,678,224 outputs
Outputs from Methods in molecular biology
#1,604
of 13,037 outputs
Outputs of similar age
#40,125
of 164,303 outputs
Outputs of similar age from Methods in molecular biology
#9
of 64 outputs
Altmetric has tracked 22,678,224 research outputs across all sources so far. This one has received more attention than most of these and is in the 74th percentile.
So far Altmetric has tracked 13,037 research outputs from this source. They receive a mean Attention Score of 3.3. This one has done well, scoring higher than 87% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 164,303 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 75% of its contemporaries.
We're also able to compare this research output to 64 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 85% of its contemporaries.