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Computational Methods in Systems Biology

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Cover of 'Computational Methods in Systems Biology'

Table of Contents

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    Book Overview
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    Chapter 1 Rate Equations for Graphs
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    Chapter 2 Stationary Distributions and Metastable Behaviour for Self-regulating Proteins with General Lifetime Distributions
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    Chapter 3 Accelerating Reactions at the DNA Can Slow Down Transient Gene Expression
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    Chapter 4 Graphical Conditions for Rate Independence in Chemical Reaction Networks
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    Chapter 5 Interval Constraint Satisfaction and Optimization for Biological Homeostasis and Multistationarity
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    Chapter 6 Growth Dependent Computation of Chokepoints in Metabolic Networks
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    Chapter 7 On the Complexity of Quadratization for Polynomial Differential Equations
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    Chapter 8 Comparing Probabilistic and Logic Programming Approaches to Predict the Effects of Enzymes in a Neurodegenerative Disease Model
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    Chapter 9 Control Strategy Identification via Trap Spaces in Boolean Networks
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    Chapter 10 Qualitative Analysis of Mammalian Circadian Oscillations: Cycle Dynamics and Robustness
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    Chapter 11 Synthesis and Simulation of Ensembles of Boolean Networks for Cell Fate Decision
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    Chapter 12 Classifier Construction in Boolean Networks Using Algebraic Methods
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    Chapter 13 Sequential Temporary and Permanent Control of Boolean Networks
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    Chapter 14 ABC(SMC) $$^2$$ : Simultaneous Inference and Model Checking of Chemical Reaction Networks
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    Chapter 15 Parallel Parameter Synthesis for Multi-affine Hybrid Systems from Hybrid CTL Specifications
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    Chapter 16 Core Models of Receptor Reactions to Evaluate Basic Pathway Designs Enabling Heterogeneous Commitments to Apoptosis
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    Chapter 17 Drawing the Line: Basin Boundaries in Safe Petri Nets
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    Chapter 18 ModRev - Model Revision Tool for Boolean Logical Models of Biological Regulatory Networks
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    Chapter 19 fnyzer : A Python Package for the Analysis of Flexible Nets
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    Chapter 20 eBCSgen: A Software Tool for Biochemical Space Language
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    Chapter 21 What is a Cell Cycle Checkpoint? The TotemBioNet Answer
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    Chapter 22 Kaemika App: Integrating Protocols and Chemical Simulation
Attention for Chapter 20: eBCSgen: A Software Tool for Biochemical Space Language
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Chapter title
eBCSgen: A Software Tool for Biochemical Space Language
Chapter number 20
Book title
Computational Methods in Systems Biology
Published by
Springer, Cham, September 2020
DOI 10.1007/978-3-030-60327-4_20
Book ISBNs
978-3-03-060326-7, 978-3-03-060327-4
Authors

Matej Troják, David Šafránek, Lukrécia Mertová, Luboš Brim, Troják, Matej, Šafránek, David, Mertová, Lukrécia, Brim, Luboš

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The data shown below were compiled from readership statistics for 2 Mendeley readers of this research output. Click here to see the associated Mendeley record.

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Unknown 2 100%

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Readers by professional status Count As %
Student > Master 1 50%
Unknown 1 50%
Readers by discipline Count As %
Unknown 2 100%