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RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods

Overview of attention for book
Cover of 'RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Concepts and Introduction to RNA Bioinformatics
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    Chapter 2 The Principles of RNA Structure Architecture
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    Chapter 3 The Determination of RNA Folding Nearest Neighbor Parameters
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    Chapter 4 Energy-Directed RNA Structure Prediction
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    Chapter 5 Introduction to Stochastic Context Free Grammars
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    Chapter 6 An Introduction to RNA Databases
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    Chapter 7 Energy-Based RNA Consensus Secondary Structure Prediction in Multiple Sequence Alignments
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    Chapter 8 SCFGs in RNA Secondary Structure Prediction RNA secondary structure prediction : A Hands-on Approach
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    Chapter 9 Annotating Functional RNAs in Genomes Using Infernal
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    Chapter 10 Class-Specific Prediction of ncRNAs
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    Chapter 11 Abstract Shape Analysis of RNA
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    Chapter 12 Introduction to RNA Secondary Structure Comparison
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    Chapter 13 RNA Structural Alignments, Part I: Sankoff-Based Approaches for Structural Alignments
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    Chapter 14 RNA Structural Alignments, Part II: Non-Sankoff Approaches for Structural Alignments
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    Chapter 15 De Novo Discovery of Structured ncRNA Motifs in Genomic Sequences
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    Chapter 16 Phylogeny and Evolution of RNA Structure
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    Chapter 17 The Art of Editing RNA Structural Alignments
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    Chapter 18 Automated Modeling of RNA 3D Structure
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    Chapter 19 Computational Prediction of RNA–RNA Interactions
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    Chapter 20 Computational Prediction of MicroRNA Genes
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    Chapter 21 MicroRNA Target Finding by Comparative Genomics
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    Chapter 22 Bioinformatics of siRNA Design
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    Chapter 23 RNA–Protein Interactions: An Overview
Attention for Chapter 6: An Introduction to RNA Databases
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (83rd percentile)
  • High Attention Score compared to outputs of the same age and source (93rd percentile)

Mentioned by

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8 X users
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1 Facebook page
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2 Wikipedia pages

Readers on

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21 Mendeley
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Chapter title
An Introduction to RNA Databases
Chapter number 6
Book title
RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods
Published in
Methods in molecular biology, March 2014
DOI 10.1007/978-1-62703-709-9_6
Pubmed ID
Book ISBNs
978-1-62703-708-2, 978-1-62703-709-9
Authors

Hoeppner MP, Barquist LE, Gardner PP, Marc P. Hoeppner, Lars E. Barquist, Paul P. Gardner, Hoeppner, Marc P., Barquist, Lars E., Gardner, Paul P.

Editors

Jan Gorodkin, Walter L. Ruzzo

Abstract

We present an introduction to RNA databases. The history and technology behind RNA databases are briefly discussed. We examine differing methods of data collection and curation and discuss their impact on both the scope and accuracy of the resulting databases. Finally, we demonstrate these principles through detailed examination of four leading RNA databases: Noncode, miRBase, Rfam, and SILVA.

X Demographics

X Demographics

The data shown below were collected from the profiles of 8 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 21 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Spain 1 5%
India 1 5%
Unknown 19 90%

Demographic breakdown

Readers by professional status Count As %
Researcher 5 24%
Student > Bachelor 2 10%
Student > Ph. D. Student 2 10%
Student > Master 2 10%
Professor 1 5%
Other 1 5%
Unknown 8 38%
Readers by discipline Count As %
Agricultural and Biological Sciences 8 38%
Computer Science 3 14%
Biochemistry, Genetics and Molecular Biology 2 10%
Unknown 8 38%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 9. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 19 November 2016.
All research outputs
#4,046,658
of 24,666,614 outputs
Outputs from Methods in molecular biology
#988
of 13,875 outputs
Outputs of similar age
#38,091
of 228,602 outputs
Outputs of similar age from Methods in molecular biology
#11
of 145 outputs
Altmetric has tracked 24,666,614 research outputs across all sources so far. Compared to these this one has done well and is in the 83rd percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 13,875 research outputs from this source. They receive a mean Attention Score of 3.5. This one has done particularly well, scoring higher than 92% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 228,602 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 83% of its contemporaries.
We're also able to compare this research output to 145 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 93% of its contemporaries.