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Quantitative Methods in Proteomics

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Cover of 'Quantitative Methods in Proteomics'

Table of Contents

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    Book Overview
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    Chapter 1 Important Issues in Planning a Proteomics Experiment: Statistical Considerations of Quantitative Proteomic Data
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    Chapter 2 The Whereabouts of 2D Gels in Quantitative Proteomics
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    Chapter 3 Proteome Analysis with Classical 2D-PAGE
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    Chapter 4 Fast and Sensitive Coomassie Staining in Quantitative Proteomics
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    Chapter 5 Silver Staining of 2D Electrophoresis Gels
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    Chapter 6 Differential Proteome Analysis Using 2D-DIGE
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    Chapter 7 Quantitative mass spectrometry-based proteomics: an overview.
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    Chapter 8 Robust Workflow for iTRAQ-Based Peptide and Protein Quantification
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    Chapter 9 Relative Protein Quantification by MS/MS Using the Tandem Mass Tag Technology.
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    Chapter 10 A Rapid Approach for Isobaric Peptide Termini Labeling
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    Chapter 11 Isotope-Coded Protein Label
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    Chapter 12 Hydroponic Isotope Labeling of Entire Plants and High-Performance Mass Spectrometry for Quantitative Plant Proteomics
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    Chapter 13 In Vivo Quantitative Proteome Profiling: Planning and Evaluation of SILAC Experiments
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    Chapter 14 SILAC for the Study of Mammalian Cell Lines and Yeast Protein Complexes
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    Chapter 15 Post-digestion 18O Exchange/Labeling for Quantitative Shotgun Proteomics of Membrane Proteins
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    Chapter 16 Application of Label-Free Proteomics for Differential Analysis of Lung Carcinoma Cell Line A549
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    Chapter 17 Absolute Quantification of Proteins Using Standard Peptides and Multiple Reaction Monitoring
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    Chapter 18 Quantitative Methods in Proteomics
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    Chapter 19 A Practical Guide to the FLEXIQuant Method
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    Chapter 20 Label-Free Protein Quantitation Using Weighted Spectral Counting
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    Chapter 21 Discovering the Phosphoproteome of the Hydrophobic Cytochrome c Oxidase Membrane Protein Complex
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    Chapter 22 KiC Assay: A Quantitative Mass Spectrometry-Based Approach.
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    Chapter 23 Robust and High-Throughput Sample Preparation for (Semi-)Quantitative Analysis of N-Glycosylation Profiles from Plasma Samples
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    Chapter 24 Quantitative Redox Proteomics: The NOxICAT Method
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    Chapter 25 Quantitative Analysis of S-Nitrosylated Proteins
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    Chapter 26 Analysis of Ubiquitinated Proteome by Quantitative Mass Spectrometry
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    Chapter 27 Identification of Endogenous SUMO1 Accepter Sites by Mass Spectrometry
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    Chapter 28 Search and Decoy: The Automatic Identification of Mass Spectra
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    Chapter 29 Software Tools for MS-Based Quantitative Proteomics: A Brief Overview
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    Chapter 30 iTRAQ Data Interpretation
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    Chapter 31 MSQuant: A Platform for Stable Isotope-Based Quantitative Proteomics
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    Chapter 32 Erratum To: KiC Assay: A Quantitative Mass Spectrometry-Based Approach for Kinase Client Screening and Activity Analysis
Attention for Chapter 2: The Whereabouts of 2D Gels in Quantitative Proteomics
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Chapter title
The Whereabouts of 2D Gels in Quantitative Proteomics
Chapter number 2
Book title
Quantitative Methods in Proteomics
Published in
Methods in molecular biology, January 2012
DOI 10.1007/978-1-61779-885-6_2
Pubmed ID
Book ISBNs
978-1-61779-884-9, 978-1-61779-885-6
Authors

Thierry Rabilloud

Abstract

Two-dimensional gel electrophoresis has been instrumental in the development of proteomics. Although it is no longer the exclusive scheme used for proteomics, its unique features make it a still highly valuable tool, especially when multiple quantitative comparisons of samples must be made, and even for large samples series. However, quantitative proteomics using 2D gels is critically dependent on the performances of the protein detection methods used after the electrophoretic separations. This chapter therefore examines critically the various detection methods (radioactivity, dyes, fluorescence, and silver) as well as the data analysis issues that must be taken into account when quantitative comparative analysis of 2D gels is performed.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 17 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Sweden 1 6%
Unknown 16 94%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 4 24%
Researcher 3 18%
Student > Doctoral Student 2 12%
Lecturer > Senior Lecturer 2 12%
Professor 2 12%
Other 3 18%
Unknown 1 6%
Readers by discipline Count As %
Agricultural and Biological Sciences 8 47%
Biochemistry, Genetics and Molecular Biology 5 29%
Chemistry 2 12%
Medicine and Dentistry 1 6%
Unknown 1 6%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 15 June 2012.
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#20,159,700
of 22,668,244 outputs
Outputs from Methods in molecular biology
#9,817
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#221,157
of 244,068 outputs
Outputs of similar age from Methods in molecular biology
#423
of 473 outputs
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