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Data Production and Analysis in Population Genomics

Overview of attention for book
Cover of 'Data Production and Analysis in Population Genomics'

Table of Contents

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    Book Overview
  2. Altmetric Badge
    Chapter 1 Sampling in Landscape Genomics
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    Chapter 2 OligoTag: A Program for Designing Sets of Tags for Next-Generation Sequencing of Multiplexed Samples
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    Chapter 3 SNP Discovery in Non-model Organisms Using 454 Next Generation Sequencing
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    Chapter 4 In Silico Fingerprinting (ISIF): A User-Friendly In Silico AFLP Program
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    Chapter 5 Diversity Arrays Technology: A Generic Genome Profiling Technology on Open Platforms
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    Chapter 6 Two Methods to Easily Obtain Nucleotide Sequences from AFLP Loci of Interest
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    Chapter 7 Roche Genome Sequencer FLX Based High-Throughput Sequencing of Ancient DNA
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    Chapter 8 Preparation of Normalized cDNA Libraries for 454 Titanium Transcriptome Sequencing
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    Chapter 9 RAD Paired-End Sequencing for Local De Novo Assembly and SNP Discovery in Non-model Organisms
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    Chapter 10 Automated Scoring of AFLPs Using RawGeno v 2.0, a Free R CRAN Library
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    Chapter 11 Haplotype Inference
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    Chapter 12 Allele identification in assembled genomic sequence datasets.
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    Chapter 13 Multiple Testing in Large-Scale Genetic Studies
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    Chapter 14 Population Genomic Analysis of Model and Nonmodel Organisms Using Sequenced RAD Tags.
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    Chapter 15 Analysis and management of gene and allelic diversity in subdivided populations using the software program METAPOP.
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    Chapter 16 D et S el : An R-Package to Detect Marker Loci Responding to Selection
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    Chapter 17 Use of Qualitative Environmental and Phenotypic Variables in the Context of Allele Distribution Models: Detecting Signatures of Selection in the Genome of Lake Victoria Cichlids
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    Chapter 18 Genomic Scan as a Tool for Assessing the Genetic Component of Phenotypic Variance in Wild Populations
Attention for Chapter 15: Analysis and management of gene and allelic diversity in subdivided populations using the software program METAPOP.
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Chapter title
Analysis and management of gene and allelic diversity in subdivided populations using the software program METAPOP.
Chapter number 15
Book title
Data Production and Analysis in Population Genomics
Published in
Methods in molecular biology, January 2012
DOI 10.1007/978-1-61779-870-2_15
Pubmed ID
22665286
Book ISBNs
978-1-61779-869-6, 978-1-61779-870-2
Authors

Andrés Pérez-Figueroa, Silvia T. Rodríguez-Ramilo, Armando Caballero, Pérez-Figueroa, Andrés, Rodríguez-Ramilo, Silvia T., Caballero, Armando

Abstract

METAPOP (http://webs.uvigo.es/anpefi/metapop/) is a desktop application that provides an analysis of gene and allelic diversity in subdivided populations from molecular genotype or coancestry data as well as a tool for the management of genetic diversity in conservation programs. A partition of gene and allelic diversity is made within and between subpopulations, in order to assess the contribution of each subpopulation to global diversity for descriptive population genetics or conservation purposes. In the context of management of subdivided populations in in situ conservation programs, the software also determines the optimal contributions (i.e., number of offspring) of each individual, the number of migrants, and the particular subpopulations involved in the exchange of individuals in order to maintain the largest level of gene diversity in the whole population with a desired control in the rate of inbreeding. The partition of gene and allelic diversity within and between subpopulations is illustrated with microsatellite and SNP data from human populations.

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X Demographics

X Demographics

The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
 Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 13 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Spain 1 8%
Canada 1 8%
Unknown 11 85%

Demographic breakdown

Readers by professional status Count As %
Researcher 4 31%
Student > Master 3 23%
Student > Doctoral Student 2 15%
Other 2 15%
Professor > Associate Professor 1 8%
Other 0 0%
Unknown 1 8%
Readers by discipline Count As %
Agricultural and Biological Sciences 9 69%
Mathematics 1 8%
Psychology 1 8%
Chemistry 1 8%
Unknown 1 8%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 12 June 2012.
All research outputs
#18,308,895
of 22,668,244 outputs
Outputs from Methods in molecular biology
#7,828
of 13,037 outputs
Outputs of similar age
#195,945
of 244,068 outputs
Outputs of similar age from Methods in molecular biology
#325
of 473 outputs
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So far Altmetric has tracked 13,037 research outputs from this source. They receive a mean Attention Score of 3.3. This one is in the 24th percentile – i.e., 24% of its peers scored the same or lower than it.
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We're also able to compare this research output to 473 others from the same source and published within six weeks on either side of this one. This one is in the 10th percentile – i.e., 10% of its contemporaries scored the same or lower than it.

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