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Data Mining Techniques for the Life Sciences

Overview of attention for book
Cover of 'Data Mining Techniques for the Life Sciences'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Nucleic Acid Sequence and Structure Databases
  3. Altmetric Badge
    Chapter 2 Genomic Databases and Resources at the National Center for Biotechnology Information
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    Chapter 3 Protein Sequence Databases
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    Chapter 4 Protein Structure Databases
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    Chapter 5 Protein Domain Architectures
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    Chapter 6 Thermodynamic Database for Proteins: Features and Applications
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    Chapter 7 Enzyme databases.
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    Chapter 8 Biomolecular Pathway Databases
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    Chapter 9 Databases of Protein–Protein Interactions and Complexes
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    Chapter 10 Proximity Measures for Cluster Analysis
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    Chapter 11 Clustering Criteria and Algorithms
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    Chapter 12 Neural networks.
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    Chapter 13 A User’s Guide to Support Vector Machines
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    Chapter 14 Data Mining Techniques for the Life Sciences
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    Chapter 15 Integrated Tools for Biomolecular Sequence-Based Function Prediction as Exemplified by the ANNOTATOR Software Environment
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    Chapter 16 Computational Methods for Ab Initio and Comparative Gene Finding
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    Chapter 17 Sequence and structure analysis of noncoding RNAs.
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    Chapter 18 Conformational Disorder
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    Chapter 19 Protein secondary structure prediction.
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    Chapter 20 Analysis and Prediction of Protein Quaternary Structure
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    Chapter 21 Prediction of Posttranslational Modification of Proteins from Their Amino Acid Sequence
  23. Altmetric Badge
    Chapter 22 Protein Crystallizability
Attention for Chapter 17: Sequence and structure analysis of noncoding RNAs.
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Chapter title
Sequence and structure analysis of noncoding RNAs.
Chapter number 17
Book title
Data Mining Techniques for the Life Sciences
Published in
Methods in molecular biology, March 2010
DOI 10.1007/978-1-60327-241-4_17
Pubmed ID
Book ISBNs
978-1-60327-240-7, 978-1-60327-241-4
Authors

Washietl S, Stefan Washietl, Washietl, Stefan

Abstract

Noncoding RNAs (ncRNAs) are increasingly recognized as important functional molecules in the cell. Here we give a short overview of fundamental computational techniques to analyze ncRNAs that can help us better understand their function. Topics covered include prediction of secondary structure from the primary sequence, prediction of consensus structures for homologous sequences, search for homologous sequences in databases using sequence and structure comparisons, annotation of tRNAs, rRNAs, snoRNAs, and microRNAs, de novo prediction of novel ncRNAs, and prediction of RNA/RNA interactions including miRNA target prediction.

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X Demographics

The data shown below were collected from the profiles of 2 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 34 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 5 15%
France 2 6%
Germany 1 3%
Mexico 1 3%
Poland 1 3%
Unknown 24 71%

Demographic breakdown

Readers by professional status Count As %
Researcher 10 29%
Student > Ph. D. Student 7 21%
Professor > Associate Professor 4 12%
Professor 3 9%
Student > Postgraduate 3 9%
Other 5 15%
Unknown 2 6%
Readers by discipline Count As %
Agricultural and Biological Sciences 23 68%
Medicine and Dentistry 5 15%
Biochemistry, Genetics and Molecular Biology 2 6%
Earth and Planetary Sciences 1 3%
Veterinary Science and Veterinary Medicine 1 3%
Other 0 0%
Unknown 2 6%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 21 March 2012.
All research outputs
#15,242,707
of 22,663,969 outputs
Outputs from Methods in molecular biology
#5,281
of 13,024 outputs
Outputs of similar age
#76,567
of 93,734 outputs
Outputs of similar age from Methods in molecular biology
#11
of 21 outputs
Altmetric has tracked 22,663,969 research outputs across all sources so far. This one is in the 22nd percentile – i.e., 22% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,024 research outputs from this source. They receive a mean Attention Score of 3.3. This one is in the 45th percentile – i.e., 45% of its peers scored the same or lower than it.
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We're also able to compare this research output to 21 others from the same source and published within six weeks on either side of this one. This one is in the 33rd percentile – i.e., 33% of its contemporaries scored the same or lower than it.