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Comparative Genomics

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Cover of 'Comparative Genomics'

Table of Contents

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    Book Overview
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    Chapter 1 A Cubic Algorithm for the Generalized Rank Median of Three Genomes
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    Chapter 2 The Rooted SCJ Median with Single Gene Duplications
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    Chapter 3 A General Framework for Genome Rearrangement with Biological Constraints
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    Chapter 4 Estimation of the True Evolutionary Distance Under the INFER Model
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    Chapter 5 On the Hardness of Approximating Linearization of Scaffolds Sharing Repeated Contigs
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    Chapter 6 Detecting Large Indels Using Optical Map Data
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    Chapter 7 mClass: Cancer Type Classification with Somatic Point Mutation Data
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    Chapter 8 Speciation and Rate Variation in a Birth-and-Death Account of WGD and Fractionation; the Case of Solanaceae
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    Chapter 9 Detecting Introgression in Anopheles Mosquito Genomes Using a Reconciliation-Based Approach
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    Chapter 10 Reconstructing the History of Syntenies Through Super-Reconciliation
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    Chapter 11 On the Variance of Internode Distance Under the Multispecies Coalescent
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    Chapter 12 Linear-Time Algorithms for Some Phylogenetic Tree Completion Problems Under Robinson-Foulds Distance
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    Chapter 13 Multi-SpaM : A Maximum-Likelihood Approach to Phylogeny Reconstruction Using Multiple Spaced-Word Matches and Quartet Trees
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    Chapter 14 FastNet: Fast and Accurate Statistical Inference of Phylogenetic Networks Using Large-Scale Genomic Sequence Data
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    Chapter 15 NJMerge: A Generic Technique for Scaling Phylogeny Estimation Methods and Its Application to Species Trees
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    Chapter 16 On the Non-uniqueness of Solutions to the Perfect Phylogeny Mixture Problem
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    Chapter 17 Non-parametric and Semi-parametric Support Estimation Using SEquential RESampling Random Walks on Biomolecular Sequences
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    Chapter 18 Linear-Time Tree Containment in Phylogenetic Networks
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