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Biomolecular Simulations

Overview of attention for book
Cover of 'Biomolecular Simulations'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Ab Initio , Density Functional Theory, and Semi-Empirical Calculations
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    Chapter 2 Ab Initio Molecular Dynamics
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    Chapter 3 Introduction to QM/MM Simulations.
  5. Altmetric Badge
    Chapter 4 Computational Enzymology
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    Chapter 5 QM and QM/MM Simulations of Proteins
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    Chapter 6 Classical Molecular Dynamics in a Nutshell
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    Chapter 7 Enhanced Sampling Algorithms
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    Chapter 8 Force Fields for Classical Molecular Dynamics
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    Chapter 9 Polarizable Force Fields
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    Chapter 10 Electrostatics Interactions in Classical Simulations
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    Chapter 11 An introduction to best practices in free energy calculations.
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    Chapter 12 Recipes for Free Energy Calculations in Biomolecular Systems
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    Chapter 13 Molecular Docking Methodologies
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    Chapter 14 Simulation Studies of the Mechanism of Membrane Transporters
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    Chapter 15 Molecular Dynamics Simulations of Lipid Bilayers: Simple Recipe of How to Do It
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    Chapter 16 Simulations of Lipid Monolayers
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    Chapter 17 Simulating DNA by Molecular Dynamics: Aims, Methods, and Validation
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    Chapter 18 Simulation of Carbohydrates, from Molecular Docking to Dynamics in Water
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    Chapter 19 Systematic Methods for Structurally Consistent Coarse-Grained Models
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    Chapter 20 The Martini Coarse-Grained Force Field
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    Chapter 21 Multiscale Molecular Modeling
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    Chapter 22 Coarse-Grained Models for Protein Folding and Aggregation
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    Chapter 23 Elastic Network Models: Theoretical and Empirical Foundations
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    Chapter 24 An Introduction to Dissipative Particle Dynamics
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    Chapter 25 Multiscale Molecular Dynamics Simulations of Membrane Proteins
  27. Altmetric Badge
    Chapter 26 Vesicles and Vesicle Fusion: Coarse-Grained Simulations
Attention for Chapter 11: An introduction to best practices in free energy calculations.
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (82nd percentile)
  • High Attention Score compared to outputs of the same age and source (84th percentile)

Mentioned by

blogs
1 blog
f1000
1 research highlight platform

Citations

dimensions_citation
89 Dimensions

Readers on

mendeley
87 Mendeley
citeulike
2 CiteULike
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Chapter title
An introduction to best practices in free energy calculations.
Chapter number 11
Book title
Biomolecular Simulations
Published in
Methods in molecular biology, January 2013
DOI 10.1007/978-1-62703-017-5_11
Pubmed ID
Book ISBNs
978-1-62703-016-8, 978-1-62703-017-5
Authors

Shirts MR, Mobley DL, Michael R. Shirts, David L. Mobley, Shirts, Michael R., Mobley, David L.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 87 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 2 2%
United Kingdom 1 1%
Spain 1 1%
Sweden 1 1%
Unknown 82 94%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 29 33%
Student > Master 15 17%
Researcher 14 16%
Professor 7 8%
Student > Doctoral Student 5 6%
Other 9 10%
Unknown 8 9%
Readers by discipline Count As %
Chemistry 30 34%
Biochemistry, Genetics and Molecular Biology 10 11%
Physics and Astronomy 7 8%
Agricultural and Biological Sciences 7 8%
Pharmacology, Toxicology and Pharmaceutical Science 5 6%
Other 14 16%
Unknown 14 16%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 7. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 17 October 2019.
All research outputs
#4,682,989
of 22,824,164 outputs
Outputs from Methods in molecular biology
#1,365
of 13,124 outputs
Outputs of similar age
#50,550
of 281,149 outputs
Outputs of similar age from Methods in molecular biology
#52
of 340 outputs
Altmetric has tracked 22,824,164 research outputs across all sources so far. Compared to these this one has done well and is in the 79th percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 13,124 research outputs from this source. They receive a mean Attention Score of 3.4. This one has done well, scoring higher than 89% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 281,149 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 82% of its contemporaries.
We're also able to compare this research output to 340 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 84% of its contemporaries.