| Chapter title |
Computational gene annotation in new genome assemblies using GeneID.
|
|---|---|
| Chapter number | 12 |
| Book title |
Bioinformatics for DNA Sequence Analysis
|
| Published in |
Methods in molecular biology, February 2009
|
| DOI | 10.1007/978-1-59745-251-9_12 |
| Pubmed ID | |
| Book ISBNs |
978-1-58829-910-9, 978-1-59745-251-9
|
| Authors |
Blanco E, Abril JF, Enrique Blanco, Josep F. Abril, Blanco, Enrique, Abril, Josep F. |
| Editors |
David Posada |
| Abstract |
The sequence of many eukaryotic genomes is nowadays available from a personal computer to any researcher in the world-wide scientific community. However, the sequences are worthless without the adequate annotation of the biological meaningful elements. The annotation of the genes, in particular, is a challenging task that can not be tackled without the aid of specific bioinformatics tools. We present in this chapter a simple protocol mainly based on the combination of the program GeneID and other computational tools to annotate the location of a gene, which was previously annotated in D. melanogaster, in the recently assembled genome of D. yakuba. |
Mendeley readers
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| Unknown | 20 | 100% |
Demographic breakdown
| Readers by professional status | Count | As % |
|---|---|---|
| Student > Ph. D. Student | 6 | 30% |
| Researcher | 5 | 25% |
| Student > Bachelor | 2 | 10% |
| Professor | 2 | 10% |
| Student > Master | 2 | 10% |
| Other | 2 | 10% |
| Unknown | 1 | 5% |
| Readers by discipline | Count | As % |
|---|---|---|
| Agricultural and Biological Sciences | 13 | 65% |
| Biochemistry, Genetics and Molecular Biology | 4 | 20% |
| Medicine and Dentistry | 1 | 5% |
| Unknown | 2 | 10% |