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Plant Genotyping

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Cover of 'Plant Genotyping'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Advances in Plant Genotyping: Where the Future Will Take Us
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    Chapter 2 Molecular Marker Applications in Plants
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    Chapter 3 Bioinformatics: identification of markers from next-generation sequence data.
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    Chapter 4 Molecular Marker Databases
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    Chapter 5 Plant Genotyping Using Fluorescently Tagged Inter-Simple Sequence Repeats (ISSRs): Basic Principles and Methodology
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    Chapter 6 SSR Genotyping
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    Chapter 7 Genotyping Analysis Using an RFLP Assay
  9. Altmetric Badge
    Chapter 8 DNA Barcoding for Plants
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    Chapter 9 Multiplexed digital gene expression analysis for genetical genomics in large plant populations.
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    Chapter 10 SNP Genotyping by Heteroduplex Analysis
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    Chapter 11 Application of the High-Resolution Melting Technique for Gene Mapping and SNP Detection in Plants
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    Chapter 12 Challenges of Genotyping Polyploid Species
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    Chapter 13 Genomic Reduction Assisted Single Nucleotide Polymorphism Discovery Using 454-Pyrosequencing
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    Chapter 14 Inter-SINE Amplified Polymorphism (ISAP) for Rapid and Robust Plant Genotyping
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    Chapter 15 Screening of Mutations by TILLING in Plants
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    Chapter 16 Gene Analysis Using Mass Spectrometric Cleaved Amplified Polymorphic Sequence (MS-CAPS) with Matrix-Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF)
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    Chapter 17 Quantitative SNP Genotyping of Polyploids with MassARRAY and Other Platforms.
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    Chapter 18 SNP Genotyping Using KASPar Assays
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    Chapter 19 Skim-based genotyping by sequencing.
  21. Altmetric Badge
    Chapter 20 The Restriction Enzyme Target Approach to Genotyping by Sequencing (GBS).
  22. Altmetric Badge
    Chapter 21 Methods for the design, implementation, and analysis of illumina infinium™ SNP assays in plants.
  23. Altmetric Badge
    Chapter 22 Use of the Illumina GoldenGate Assay for Single Nucleotide Polymorphism (SNP) Genotyping in Cereal Crops
Attention for Chapter 9: Multiplexed digital gene expression analysis for genetical genomics in large plant populations.
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Chapter title
Multiplexed digital gene expression analysis for genetical genomics in large plant populations.
Chapter number 9
Book title
Plant Genotyping
Published in
Methods in molecular biology, November 2014
DOI 10.1007/978-1-4939-1966-6_9
Pubmed ID
Book ISBNs
978-1-4939-1965-9, 978-1-4939-1966-6
Authors

Obermeier C, Salazar-Colqui BM, Spamer V, Snowdon R, Christian Obermeier, Bertha M. Salazar-Colqui, Viola Spamer, Rod Snowdon, Obermeier, Christian, Salazar-Colqui, Bertha M., Spamer, Viola, Snowdon, Rod

Abstract

Digital gene expression (DGE) analysis is a cost-effective method for large-scale quantitative transcriptome analysis using second generation sequencing. Here we describe how adaptation of DGE with barcode indexing in large segregating plant populations of over 100 genotypes can be applied for successful expression QTL (eQTL) and gene expression network analysis to develop transcript-based markers for breeding.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 4 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 4 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 2 50%
Student > Ph. D. Student 1 25%
Student > Master 1 25%
Readers by discipline Count As %
Agricultural and Biological Sciences 4 100%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 23 January 2015.
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#20,249,662
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Outputs from Methods in molecular biology
#9,869
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Outputs of similar age from Methods in molecular biology
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