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Parasite Genomics Protocols

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Cover of 'Parasite Genomics Protocols'

Table of Contents

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    Book Overview
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    Chapter 1 The eukaryotic pathogen databases: a functional genomic resource integrating data from human and veterinary parasites.
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    Chapter 2 From sequence mapping to genome assemblies.
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    Chapter 3 Sequencing and annotation of mitochondrial genomes from individual parasitic helminths.
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    Chapter 4 A Beginners Guide to Estimating the Non-synonymous to Synonymous Rate Ratio of all Protein-Coding Genes in a Genome.
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    Chapter 5 Exploiting Genetic Variation to Discover Genes Involved in Important Disease Phenotypes
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    Chapter 6 Identification and analysis of ingi-related retroposons in the trypanosomatid genomes.
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    Chapter 7 Approaches for Studying mRNA Decay Mediated by SIDER2 Retroposons in Leishmania
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    Chapter 8 Gene Suppression in Schistosomes Using RNAi.
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    Chapter 9 Construction of Trypanosoma brucei Illumina RNA-Seq Libraries Enriched for Transcript Ends.
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    Chapter 10 Techniques to Study Epigenetic Control and the Epigenome in Parasites
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    Chapter 11 The Genome-Wide Identification of Promoter Regions in Toxoplasma gondii.
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    Chapter 12 RNA-Seq Approaches for Determining mRNA Abundance in Leishmania.
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    Chapter 13 Protein microarrays for parasite antigen discovery.
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    Chapter 14 A transposon-based tool for transformation and mutagenesis in trypanosomatid protozoa.
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    Chapter 15 Separation of Basic Proteins from Leishmania Using a Combination of Free Flow Electrophoresis (FFE) and 2D Electrophoresis (2-DE) Under Basic Conditions
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    Chapter 16 Proteomic Analysis of Posttranslational Modifications Using iTRAQ in Leishmania.
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    Chapter 17 Large-Scale Differential Proteome Analysis in Plasmodium falciparum Under Drug Treatment.
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    Chapter 18 Parasite Genomics Protocols
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    Chapter 19 Molecular Genotyping of Trypanosoma cruzi for Lineage Assignment and Population Genetics.
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    Chapter 20 Screening Leishmania donovani Complex-Specific Genes Required for Visceral Disease.
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    Chapter 21 ERRATUM: From Sequence Mapping to Genome Assemblies
Attention for Chapter 1: The eukaryotic pathogen databases: a functional genomic resource integrating data from human and veterinary parasites.
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About this Attention Score

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  • High Attention Score compared to outputs of the same age and source (83rd percentile)

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1 Wikipedia page

Citations

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Chapter title
The eukaryotic pathogen databases: a functional genomic resource integrating data from human and veterinary parasites.
Chapter number 1
Book title
Parasite Genomics Protocols
Published in
Methods in molecular biology, January 2015
DOI 10.1007/978-1-4939-1438-8_1
Pubmed ID
Book ISBNs
978-1-4939-1437-1, 978-1-4939-1438-8
Authors

Omar S Harb, David S Roos, Harb OS, Roos DS, Omar S. Harb, David S. Roos, Harb, Omar S., Roos, David S.

Abstract

Over the past 20 years, advances in high-throughput biological techniques and the availability of computational resources including fast Internet access have resulted in an explosion of large genome-scale data sets "big data." While such data are readily available for download and personal use and analysis from a variety of repositories, often such analysis requires access to seldom-available computational skills. As a result a number of databases have emerged to provide scientists with online tools enabling the interrogation of data without the need for sophisticated computational skills beyond basic knowledge of Internet browser utility. This chapter focuses on the Eukaryotic Pathogen Databases (EuPathDB: http://eupathdb.org ) Bioinformatic Resource Center (BRC) and illustrates some of the available tools and methods.

X Demographics

X Demographics

The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 11 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 11 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 2 18%
Student > Bachelor 2 18%
Librarian 1 9%
Lecturer 1 9%
Student > Ph. D. Student 1 9%
Other 1 9%
Unknown 3 27%
Readers by discipline Count As %
Psychology 3 27%
Computer Science 2 18%
Agricultural and Biological Sciences 2 18%
Biochemistry, Genetics and Molecular Biology 1 9%
Unknown 3 27%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 4. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 03 August 2016.
All research outputs
#7,203,930
of 22,770,070 outputs
Outputs from Methods in molecular biology
#2,192
of 13,090 outputs
Outputs of similar age
#100,464
of 352,903 outputs
Outputs of similar age from Methods in molecular biology
#158
of 996 outputs
Altmetric has tracked 22,770,070 research outputs across all sources so far. This one has received more attention than most of these and is in the 67th percentile.
So far Altmetric has tracked 13,090 research outputs from this source. They receive a mean Attention Score of 3.3. This one has done well, scoring higher than 82% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 352,903 tracked outputs that were published within six weeks on either side of this one in any source. This one has gotten more attention than average, scoring higher than 70% of its contemporaries.
We're also able to compare this research output to 996 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 83% of its contemporaries.