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Regulatory Non-Coding RNAs

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Cover of 'Regulatory Non-Coding RNAs'

Table of Contents

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    Book Overview
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    Chapter 1 Diverse Functions and Mechanisms of Mammalian Long Noncoding RNAs.
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    Chapter 2 Sequence-Defined Oligoaminoamides for the Delivery of siRNAs.
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    Chapter 3 A Biochemical Approach to Identify Direct MicroRNA Targets.
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    Chapter 4 Native Gel Analysis for Mammalian MicroRNPs Assembled from Pre-microRNAs.
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    Chapter 5 Identification and Validation of miRNA Target Sites Within Nontraditional miRNA Targets.
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    Chapter 6 Fractionation of Non-polyadenylated and Ribosomal-Free RNAs from Mammalian Cells
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    Chapter 7 Affinity Purification of Long Noncoding RNA-Protein Complexes from Formaldehyde Cross-Linked Mammalian Cells.
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    Chapter 8 RNA Pulldown Protocol for In Vitro Detection and Identification of RNA-Associated Proteins
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    Chapter 9 nRIP-seq: A Technique to Identify RNA Targets of an RNA Binding Protein on a Genome-Wide Scale.
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    Chapter 10 Analysis of the Subcellular Distribution of RNA by Fluorescence In Situ Hybridization
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    Chapter 11 RNA Fluorescence In Situ Hybridization in Cultured Mammalian Cells
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    Chapter 12 Locating RNAs In Situ with FISH-STIC Probes.
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    Chapter 13 Rapid and Efficient Elimination of Specific Nuclear Noncoding RNAs in Mammalian Cells with Antisense Oligonucleotides
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    Chapter 14 On Using Magnesium and Potassium Ions in RNA Experiments
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    Chapter 15 Regulatory Non-Coding RNAs
Attention for Chapter 3: A Biochemical Approach to Identify Direct MicroRNA Targets.
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Chapter title
A Biochemical Approach to Identify Direct MicroRNA Targets.
Chapter number 3
Book title
Regulatory Non-Coding RNAs
Published in
Methods in molecular biology, January 2015
DOI 10.1007/978-1-4939-1369-5_3
Pubmed ID
Book ISBNs
978-1-4939-1368-8, 978-1-4939-1369-5
Authors

Murugan Subramanian, Xiao Ling Li, Toshifumi Hara, Ashish Lal

Abstract

We have recently developed a biochemical approach to isolate miRNA-bound mRNAs and have used this method to identify the genome-wide mRNAs regulated by the tumor suppressor miRNA miR-34a. This method involves transfection of cells with biotinylated miRNA mimics, streptavidin pulldown, RNA isolation, and qRT-PCR. The protocol in this chapter describes these steps and the issues that should be considered while designing such pulldown experiments.

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X Demographics

The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 18 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 18 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 4 22%
Researcher 4 22%
Student > Bachelor 3 17%
Student > Master 2 11%
Student > Doctoral Student 1 6%
Other 2 11%
Unknown 2 11%
Readers by discipline Count As %
Agricultural and Biological Sciences 7 39%
Biochemistry, Genetics and Molecular Biology 5 28%
Medicine and Dentistry 3 17%
Unknown 3 17%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 23 September 2014.
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#20,237,640
of 22,764,165 outputs
Outputs from Methods in molecular biology
#9,865
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Outputs of similar age
#295,617
of 352,894 outputs
Outputs of similar age from Methods in molecular biology
#634
of 995 outputs
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