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Mammalian Synthetic Promoters

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Cover of 'Mammalian Synthetic Promoters'

Table of Contents

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    Book Overview
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    Chapter 1 Initial Considerations Before Designing a Promoter Construct
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    Chapter 2 Demonstrating Interactions of Transcription Factors with DNA by Electrophoretic Mobility Shift Assay
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    Chapter 3 Chromatin Immunoprecipitation and Quantitative Real-Time PCR to Assess Binding of a Protein of Interest to Identified Predicted Binding Sites Within a Promoter
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    Chapter 4 Secreted Reporters for Monitoring Multiple Promoter Function
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    Chapter 5 Bioluminescence Monitoring of Promoter Activity In Vitro and In Vivo
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    Chapter 6 Monitoring Promoter Activity by Flow Cytometry
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    Chapter 7 Functional Screening of Core Promoter Activity
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    Chapter 8 Bioinformatically Informed Design of Synthetic Mammalian Promoters
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    Chapter 9 Synthetic Tumor-Specific Promoters for Transcriptional Regulation of Viral Replication
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    Chapter 10 Constructing Strong Cell Type-Specific Promoters Through Informed Design
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    Chapter 11 PCR Assembly of Synthetic Promoters
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    Chapter 12 The Tetracycline Responsive System
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    Chapter 13 Light-Responsive Promoters
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    Chapter 14 A Simple Method for Constructing Artificial Promoters Activated in Response to Ultrasound Stimulation
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    Chapter 15 Promoter Activation with Electromagnetism
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    Chapter 16 Application of Synthetic Tumor-Specific Promoters Responsive to the Tumor Microenvironment
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    Chapter 17 Improving water-use efficiency by decreasing stomatal conductance and transpiration rate to maintain higher ear photosynthetic rate in drought-resistant wheat
  19. Altmetric Badge
    Chapter 18 Computational Sequence Design with R2oDNA Designer
  20. Altmetric Badge
    Chapter 19 Design of Synthetic Promoters for Gene Circuits in Mammalian Cells
Attention for Chapter 11: PCR Assembly of Synthetic Promoters
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Chapter title
PCR Assembly of Synthetic Promoters
Chapter number 11
Book title
Mammalian Synthetic Promoters
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4939-7223-4_11
Pubmed ID
Book ISBNs
978-1-4939-7221-0, 978-1-4939-7223-4
Authors

Hodan Mohamed, David Gould

Abstract

In this chapter, we describe a two-step assembly PCR method to construct synthetic promoters. Essentially, this method takes advantage of specific annealing between complimentary DNA sequences to build random TFBS combinations within the assembled PCR products. A DNA polymerase is then employed to fill in the unpaired nucleotides in the generated sequences and also to amplify the assembled PCR products. We have used this method to generate synthetic promoters whereby the orientation of the TFBS can be controlled, the spacing between TFBS can be predetermined, and also the full diversity of the consensus TFBS can be covered through the use of degenerate oligonucleotides .

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 7 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 7 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 2 29%
Student > Postgraduate 2 29%
Student > Ph. D. Student 1 14%
Student > Doctoral Student 1 14%
Unknown 1 14%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 3 43%
Agricultural and Biological Sciences 2 29%
Pharmacology, Toxicology and Pharmaceutical Science 1 14%
Unknown 1 14%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 14 August 2017.
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#20,442,790
of 22,997,544 outputs
Outputs from Methods in molecular biology
#9,933
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Outputs of similar age
#356,128
of 421,196 outputs
Outputs of similar age from Methods in molecular biology
#842
of 1,074 outputs
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