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2D PAGE: Sample Preparation and Fractionation

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Cover of '2D PAGE: Sample Preparation and Fractionation'

Table of Contents

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    Book Overview
  2. Altmetric Badge
    Chapter 1 Mechanical/physical methods of cell disruption and tissue homogenization.
  3. Altmetric Badge
    Chapter 2 Bacteria and Yeast Cell Disruption Using Lytic Enzymes
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    Chapter 3 Sample Solublization Buffers for Two-Dimensional Electrophoresis
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    Chapter 4 Quantitation of Protein in Samples Prepared for 2-D Electrophoresis
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    Chapter 5 Removal of Interfering Substances in Samples Prepared for Two-Dimensional (2-D) Electrophoresis
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    Chapter 6 Protein Concentration by Hydrophilic Interaction Chromatography Combined with Solid Phase Extraction
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    Chapter 7 Difference Gel Electrophoresis Based on Lys/Cys Tagging
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    Chapter 8 Isotope-Coded Two-Dimensional Maps: Tagging with Deuterated Acrylamide and 2-Vinylpyridine
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    Chapter 9 Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC)
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    Chapter 10 ICPL—Isotope-Coded Protein Label
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    Chapter 11 Radiolabeling for Two-Dimensional Gel Analysis
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    Chapter 12 Sequential Extraction of Proteins by Chemical Reagents
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    Chapter 13 Reducing Sample Complexity by RP-HPLC: Beyond the Tip of the Protein Expression Iceberg
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    Chapter 14 Enriching Basic and Acidic Rat Brain Proteins with Ion Exchange Mini Spin Columns Before Two-Dimensional Gel Electrophoresis
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    Chapter 15 Reducing the Complexity of the Escherichia coli Proteome by Chromatography on Reactive Dye Columns
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    Chapter 16 Reducing Sample Complexity in Proteomics by Chromatofocusing with Simple Buffer Mixtures
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    Chapter 17 Fractionation of Proteins by Immobilized Metal Affinity Chromatography
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    Chapter 18 Fractionation of Proteins by Heparin Chromatography
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    Chapter 19 Fractionation of complex protein mixtures by liquid-phase isoelectric focusing.
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    Chapter 20 Microscale Isoelectric Focusing in Solution
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    Chapter 21 2D PAGE: Sample Preparation and Fractionation
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    Chapter 22 Sample Prefractionation in Granulated Sephadex IEF Gels
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    Chapter 23 Free-Flow Electrophoresis System for Plasma Proteomic Applications
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    Chapter 24 Protein Fractionation by Preparative Electrophoresis
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    Chapter 25 2D PAGE: Sample Preparation and Fractionation
  27. Altmetric Badge
    Chapter 26 Isolation of Highly Pure Rat Liver Mitochondria with the Aid of Zone-Electrophoresis in a Free Flow Device (ZE-FFE)
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    Chapter 27 Isolation of Proteins and Protein Complexes by Immunoprecipitation
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    Chapter 28 Isolation of Phosphoproteins
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    Chapter 29 Glycoprotein Enrichment Through Lectin Affinity Techniques
  31. Altmetric Badge
    Chapter 30 Isolation of bacterial cell membranes proteins using carbonate extraction.
  32. Altmetric Badge
    Chapter 31 Enrichment of Membrane Proteins by Partitioning in Detergent/Polymer Aqueous Two-Phase Systems
  33. Altmetric Badge
    Chapter 32 The Isolation of Detergent-Resistant Lipid Rafts for Two-Dimensional Electrophoresis
  34. Altmetric Badge
    Chapter 33 Isolation of Membrane Protein Complexes by Blue Native Electrophoresis
  35. Altmetric Badge
    Chapter 34 Tissue Microdissection
Attention for Chapter 1: Mechanical/physical methods of cell disruption and tissue homogenization.
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (87th percentile)
  • High Attention Score compared to outputs of the same age and source (96th percentile)

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Citations

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Chapter title
Mechanical/physical methods of cell disruption and tissue homogenization.
Chapter number 1
Book title
2D PAGE: Sample Preparation and Fractionation
Published in
Methods in molecular biology, March 2008
DOI 10.1007/978-1-60327-064-9_1
Pubmed ID
Book ISBNs
978-1-58829-722-8, 978-1-60327-064-9
Authors

Goldberg S, Stanley Goldberg, Goldberg, Stanley

Abstract

This chapter covers the various methods of mechanical cell disruption and tissue homogenization that are currently commercially available for processing minute samples (<1 ml) to larger production quantities. These mechanical methods of lysing do not introduce chemicals or enzymes to the system. However, the energies needed when using these "harsh" methods can be high and destroy the very proteins being sought. The destruction of cell membranes and walls is effected by subjecting the cells (1) to shearing by liquid flow, (2) to exploding by pressure differences between inside and outside of cell, (3) to collision forces by impact of beads or paddles, or (4) a combination of these forces. Practical suggestions to optimize each method, where to acquire such equipment, and links to reference sources are included.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 187 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Mexico 1 <1%
Colombia 1 <1%
Austria 1 <1%
Unknown 184 98%

Demographic breakdown

Readers by professional status Count As %
Student > Bachelor 44 24%
Student > Ph. D. Student 29 16%
Student > Master 26 14%
Researcher 18 10%
Student > Doctoral Student 9 5%
Other 23 12%
Unknown 38 20%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 46 25%
Agricultural and Biological Sciences 37 20%
Chemistry 17 9%
Engineering 13 7%
Immunology and Microbiology 6 3%
Other 21 11%
Unknown 47 25%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 10. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 21 September 2023.
All research outputs
#3,278,517
of 23,262,131 outputs
Outputs from Methods in molecular biology
#756
of 13,319 outputs
Outputs of similar age
#9,915
of 83,079 outputs
Outputs of similar age from Methods in molecular biology
#1
of 25 outputs
Altmetric has tracked 23,262,131 research outputs across all sources so far. Compared to these this one has done well and is in the 85th percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 13,319 research outputs from this source. They receive a mean Attention Score of 3.4. This one has done particularly well, scoring higher than 94% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 83,079 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 87% of its contemporaries.
We're also able to compare this research output to 25 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 96% of its contemporaries.