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Bacterial Regulatory RNA

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Cover of 'Bacterial Regulatory RNA'

Table of Contents

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    Book Overview
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    Chapter 1 RNA Extraction from Gram-Positive Bacteria Membrane Vesicles Using a Polymer-Based Precipitation Method
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    Chapter 2 Extraction and Purification of Outer Membrane Vesicles and Their Associated RNAs
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    Chapter 3 Analysis of Phage Regulatory RNAs: Sequencing Library Construction from the Fraction of Small Prokaryotic RNAs Less Than 50 Nucleotides in Length.
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    Chapter 4 Discovering Novel Bacterial Small RNA by RNA-seq Analysis Toolkit ANNOgesic.
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    Chapter 5 Ribosome Profiling Methods Adapted to the Study of RNA-Dependent Translation Regulation in Staphylococcus aureus
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    Chapter 6 CRISPR Interference-Based Functional Small RNA Genomics
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    Chapter 7 Investigation of sRNA-mRNA Interactions in Bacillus subtilis In Vivo
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    Chapter 8 In Vitro Methods for the Investigation of sRNA-mRNA Interactions in Bacillus subtilis
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    Chapter 9 RNA Double-Helix Hybridization Measured by Fluorescence Correlation Spectroscopy
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    Chapter 10 New Perspectives on Crosstalks Between Bacterial Regulatory RNAs from Outer Membrane Vesicles and Eukaryotic Cells
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    Chapter 11 Experimental Validation of RNA–RNA Interactions by Electrophoretic Mobility Shift Assay
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    Chapter 12 Dynamics and Function of sRNA/mRNAs Under the Scrutiny of Computational Simulation Methods
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    Chapter 13 Analysis of sRNAs and Their mRNA Targets in Sinorhizobium meliloti : Focus on Half-Life Determination
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    Chapter 14 Evaluation of 5′-End Phosphorylation for Small RNA Stability and Target Regulation In Vivo
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    Chapter 15 In-Gel Cyanoethylation for Pseudouridines Mass Spectrometry Detection of Bacterial Regulatory RNA
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    Chapter 16 Directed Screening for sRNA Targets in E. coli Using a Plasmid Library
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    Chapter 17 Defining Bacterial RNA-RNA Interactomes Using CLASH
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    Chapter 18 Global Identification of RNA-Binding Proteins in Bacteria
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    Chapter 19 An Integrated Affinity Chromatography-Based Approach to Unravel the sRNA Interactome in Nitrogen-Fixing Rhizobia
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    Chapter 20 sRNA Structural Modeling Based on NMR Data.
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    Chapter 21 Circular and Linear Dichroism for the Analysis of Small Noncoding RNA Properties
Attention for Chapter 3: Analysis of Phage Regulatory RNAs: Sequencing Library Construction from the Fraction of Small Prokaryotic RNAs Less Than 50 Nucleotides in Length.
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Chapter title
Analysis of Phage Regulatory RNAs: Sequencing Library Construction from the Fraction of Small Prokaryotic RNAs Less Than 50 Nucleotides in Length.
Chapter number 3
Book title
Bacterial Regulatory RNA
Published in
Methods in molecular biology, January 2024
DOI 10.1007/978-1-0716-3565-0_3
Pubmed ID
Book ISBNs
978-1-07-163564-3, 978-1-07-163565-0
Authors

Bloch, Sylwia, Lewandowska, Natalia, Wesołowski, Wojciech, Łukasiak, Aleksandra, Mach, Paulina, Nejman-Faleńczyk, Bożena, Węgrzyn, Grzegorz

Abstract

So far, bacterial regulatory sRNAs of length less than 50 nucleotides have been poorly understood, and a low number of such molecules has been identified. The first microRNA-size functional ribonucleic acid occurring in a bacterial cell has been described only recently, and it was found to be encoded by a bacteriophage. One of the reasons for such a scarcity in this field is the lack of procedures intended for the isolation and selection of molecules of this size from bacterial cells. To meet these difficulties, we describe here the few-step procedure of isolation, purification, selection, and sequencing library preparation that is dedicated to the fraction of very small, bacterial RNA molecules.

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Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 13 January 2024.
All research outputs
#17,126,705
of 25,162,879 outputs
Outputs from Methods in molecular biology
#5,958
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Outputs of similar age
#104,025
of 202,969 outputs
Outputs of similar age from Methods in molecular biology
#98
of 221 outputs
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So far Altmetric has tracked 14,129 research outputs from this source. They receive a mean Attention Score of 3.5. This one is in the 42nd percentile – i.e., 42% of its peers scored the same or lower than it.
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We're also able to compare this research output to 221 others from the same source and published within six weeks on either side of this one. This one is in the 23rd percentile – i.e., 23% of its contemporaries scored the same or lower than it.