Chapter title |
Chemoproteomic Profiling of Adenylation Domain Functions in Gramicidin S-Producing Non-ribosomal Peptide Synthetases.
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Book title |
Non-Ribosomal Peptide Biosynthesis and Engineering
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Published in |
Methods in molecular biology, January 2023
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DOI | 10.1007/978-1-0716-3214-7_4 |
Pubmed ID | |
Book ISBNs |
978-1-07-163213-0, 978-1-07-163214-7
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Authors |
Ishikawa, Fumihiro, Tanabe, Genzoh |
Abstract |
Many amino acid-containing natural products are biosynthesized by large, multifunctional enzymes known as non-ribosomal peptide synthetases (NRPSs). Adenylation (A) domains in NRPSs are responsible for the incorporation of amino acid building blocks and can be considered as engineering domains; therefore, advanced techniques are required to not only rapidly verify expression and folding, but also accelerate the functional prediction of the A-domains in lysates from native and heterologous systems. We recently developed activity-based protein profiling (ABPP) of NRPSs that offers a simple and robust analytical platform for A-domains and provides insights into their enzyme-substrate specificity. In this chapter, we describe the design and synthesis of these ABPP probes and provide a summary of our work on the development of a series of protocols for labeling, visualizing, and analyzing endogenous NRPSs in complex biological systems. |
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