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Z-DNA

Overview of attention for book
Z-DNA
Springer US

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 The Origin of Left-Handed Poly[d(G-C)]
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    Chapter 2 Characterization of Z-DNA Using Circular Dichroism
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    Chapter 3 Characterization of Z-DNA by Infrared Spectroscopy
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    Chapter 4 Crystallization of Z-DNA in Complex with Chemical and Z-DNA Binding Z-Alpha Protein.
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    Chapter 5 NMR Titration Studies in Z-DNA Dynamics
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    Chapter 6 Single-Molecule Methods to Study Z-DNA Mechanics and Dynamics
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    Chapter 7 BZ Junctions and Its Application as Probe (2AP) to Detect Z-DNA Formation and Its Effector
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    Chapter 8 Oligonucleotide Containing 8-Trifluoromethyl-2′-Deoxyguanosine as a Z-DNA Probe
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    Chapter 9 Chiroptical Properties of Z-DNA Using Ionic Porphyrins and Metalloporphyrins
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    Chapter 10 Construction of a Z-DNA-Specific Recombinant Nuclease Zαα-FOK for Conformation Studies
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    Chapter 11 Human Heme Oxygenase-1 Promoter Activity Is Mediated by Z-DNA Formation
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    Chapter 12 ChIP-Seq Strategy to Identify Z-DNA-Forming Sequences in the Human Genome.
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    Chapter 13 Detection of Z-DNA Structures in Supercoiled Genome
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    Chapter 14 Thermogenomic Analysis of Left-Handed Z-DNA Propensities in Genomes
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    Chapter 15 DeepZ: A Deep Learning Approach for Z-DNA Prediction
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    Chapter 16 Methods to Study Z-DNA-Induced Genetic Instability
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    Chapter 17 Single-Molecule Visualization of B–Z Transition in DNA Origami Using High-Speed AFM
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    Chapter 18 Adoption of A–Z Junctions in RNAs by Binding of Zα Domains
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    Chapter 19 Detecting Z-RNA and Z-DNA in Mammalian Cells.
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    Chapter 20 Identification of ADAR1 p150 and p110 Associated Edit Sites
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    Chapter 21 Z-DNA and Z-RNA: Methods—Past and Future
Attention for Chapter 19: Detecting Z-RNA and Z-DNA in Mammalian Cells.
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (84th percentile)
  • High Attention Score compared to outputs of the same age and source (96th percentile)

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Chapter title
Detecting Z-RNA and Z-DNA in Mammalian Cells.
Chapter number 19
Book title
Z-DNA
Published in
Methods in molecular biology, January 2023
DOI 10.1007/978-1-0716-3084-6_19
Pubmed ID
Book ISBNs
978-1-07-163083-9, 978-1-07-163084-6
Authors

Yin, Chaoran, Zhang, Ting, Balachandran, Siddharth

Abstract

Eukaryotic cells sense and respond to virus infections by detecting conserved virus-generated molecular structures, called pathogen-associated molecular patterns (PAMPs). PAMPs are usually produced by replicating viruses, but not typically seen in uninfected cells. Double-stranded RNA (dsRNA) is a common PAMP produced by most, if not all, RNA viruses, as well as by many DNA viruses. DsRNA can adopt either the right-handed (A-RNA) or the left-handed (Z-RNA) double-helical conformation. A-RNA is sensed by cytosolic pattern recognition receptors (PRRs) such as RIG-1-like receptor MDA-5 and the dsRNA-dependent protein kinase PKR. Z-RNA is detected by Zα domain containing PRRs, including Z-form nucleic acid binding protein 1 (ZBP1) and the p150 subunit of adenosine deaminase RNA specific 1 (ADAR1). We have recently shown that Z-RNA is generated during orthomyxovirus (e.g., influenza A virus) infections and serves as activating ligand for ZBP1. In this chapter, we describe our procedure for detecting Z-RNA in influenza A virus (IAV)-infected cells. We also outline how this procedure can be used to detect Z-RNA produced during vaccinia virus infection, as well as Z-DNA induced by a small-molecule DNA intercalator.

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X Demographics

X Demographics

The data shown below were collected from the profiles of 13 X users who shared this research output. Click here to find out more about how the information was compiled.
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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 4 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 4 100%

Demographic breakdown

Readers by professional status Count As %
Student > Master 2 50%
Unknown 2 50%
Readers by discipline Count As %
Immunology and Microbiology 1 25%
Unknown 3 75%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 10. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 09 December 2023.
All research outputs
#3,779,551
of 26,555,952 outputs
Outputs from Methods in molecular biology
#832
of 14,504 outputs
Outputs of similar age
#77,102
of 495,354 outputs
Outputs of similar age from Methods in molecular biology
#25
of 717 outputs
Altmetric has tracked 26,555,952 research outputs across all sources so far. Compared to these this one has done well and is in the 85th percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 14,504 research outputs from this source. They receive a mean Attention Score of 3.6. This one has done particularly well, scoring higher than 94% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 495,354 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 84% of its contemporaries.
We're also able to compare this research output to 717 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 96% of its contemporaries.